PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Carubv10004190m | ||||||||
Common Name | CARUB_v10004190mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
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Family | FAR1 | ||||||||
Protein Properties | Length: 779aa MW: 90159.8 Da PI: 6.6993 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 89.7 | 4.1e-28 | 34 | 138 | 1 | 90 |
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk...............tekerrtraetrtgCkaklkvkkekdgkwevt 79 +fY+eYA++vGF++ +++s++s+++g++++++fvC+++g++++ek++ +++ r +r++++t+Cka+l+vk+++dg+w++ Carubv10004190m 34 EFYKEYANSVGFTTIIKASRRSRMTGKFIDAKFVCTRYGSKKTEKDDidtglgtggfsipqaRKRGRINRSSSKTDCKACLHVKRRQDGRWVIR 127 6*******************************************999************998889999************************** PP FAR1 80 kleleHnHela 90 +l +eHnHe++ Carubv10004190m 128 SLIKEHNHEIF 138 ********987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 5.1E-26 | 34 | 138 | IPR004330 | FAR1 DNA binding domain |
Pfam | PF10551 | 2.2E-20 | 227 | 318 | IPR018289 | MULE transposase domain |
PROSITE profile | PS50966 | 9.878 | 510 | 546 | IPR007527 | Zinc finger, SWIM-type |
SMART | SM00575 | 6.9E-6 | 521 | 548 | IPR006564 | Zinc finger, PMZ-type |
Pfam | PF04434 | 9.0E-6 | 522 | 544 | IPR007527 | Zinc finger, SWIM-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 779 aa Download sequence Send to blast |
MPSGECSNVP LDDHRVDLEI NEGREFESKE EAFEFYKEYA NSVGFTTIIK ASRRSRMTGK 60 FIDAKFVCTR YGSKKTEKDD IDTGLGTGGF SIPQARKRGR INRSSSKTDC KACLHVKRRQ 120 DGRWVIRSLI KEHNHEIFTG QANSVRELGG RKKLEKQNGA IVKEVKSRKL LALEDGDVER 180 LLNFFTDMQV ENPFFFYSIN LSEEQILRNV FWVDAKGRLD YSWFCDVVSI DTTFIRNEYK 240 LPLIVFTGVN HHGQFLLLGC GLLLTDVSKS GFFWTFRAWL KAMHGCQPRV ILTKHDQTLK 300 EAVLEVFPSS RHCFYMWDTL GQMPVKLGHV MRQEKNLMDE INDAIYGSCK SDEFEKNWWE 360 IIDRFHMRDN VWLQSLYEDR EYWVPVYMKD VSLAGMCTAQ RSESVNSVFD KYIQRKTTLK 420 AFLDQYKTMI QERYEEEEKA GIETLYKQPG LKSPSPFGKQ MAEVYTREMF KKFQVEVLGG 480 VACHPKKEGE EDGPNKSTFR VQDYEQNRAF VVGWNSGSSE VVCSCRLFEF KGFLCRHAMI 540 VLQMSGELSI PSQYVLKRWT KDAKSKIFME SDQIDVESTK AQRYTDLCLR SLKLSEEASL 600 SEESYNTVTN VLNEALRKCE NKSNLIQNVE ESELVIAQDL PIHDEQYNTY EMNGDNNVAD 660 TGQEHSLQEV WKVTALQEQR NRYSILDDYL SAQHVSHEMG QINPIASNRN GYCTVHPNIH 720 SMGKSITHQR LYGTEELSFR PEAMYERLED MGESNARHHP QQHCNASNHQ HSYSNFTH* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 149 | 156 | GRKKLEKQ |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative transcription activator involved in regulating light control of development. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Carubv10004190m |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AL021637 | 0.0 | AL021637.2 Arabidopsis thaliana DNA chromosome 4, BAC clone F18F4 (ESSA project). | |||
GenBank | AL161552 | 0.0 | AL161552.2 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 52. | |||
GenBank | CP002687 | 0.0 | CP002687.1 Arabidopsis thaliana chromosome 4 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006283160.1 | 0.0 | protein FAR1-RELATED SEQUENCE 1 | ||||
Refseq | XP_023634666.1 | 0.0 | protein FAR1-RELATED SEQUENCE 1 | ||||
Refseq | XP_023634667.1 | 0.0 | protein FAR1-RELATED SEQUENCE 1 | ||||
Swissprot | Q5UBY2 | 0.0 | FRS1_ARATH; Protein FAR1-RELATED SEQUENCE 1 | ||||
TrEMBL | R0GY70 | 0.0 | R0GY70_9BRAS; Uncharacterized protein | ||||
STRING | XP_006283160.1 | 0.0 | (Capsella rubella) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM118 | 26 | 253 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G19990.2 | 0.0 | FAR1-related sequence 1 |
Link Out ? help Back to Top | |
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Phytozome | Carubv10004190m |
Entrez Gene | 17877383 |