PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Carubv10004029m
Common NameCARUB_v10004029mg
Organism
Capsella rubella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family HB-other
Protein Properties Length: 1115aa    MW: 126444 Da    PI: 8.2814
Description HB-other family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Carubv10004029mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox38.22.4e-12554856
                     -HHHHHHHHHHHHH.SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
         Homeobox  8 tkeqleeLeelFek.nrypsaeereeLAkklgLterqVkvWFqNrRakek 56
                     ++eq+++Le+++   ++yp+ +e+e+L k+lgLt + V+ WF+ rR + k
  Carubv10004029m  5 SPEQVQALEAFYLAeKMYPTSREMEDLGKSLGLTVKEVSGWFKRRRSRGK 54
                     89***********87********************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003895.7E-7160IPR001356Homeobox domain
PROSITE profilePS5007112.73156IPR001356Homeobox domain
CDDcd000866.50E-10352No hitNo description
Gene3DG3DSA:1.10.10.606.4E-11355IPR009057Homeodomain-like
SuperFamilySSF466895.56E-10357IPR009057Homeodomain-like
PfamPF000467.1E-10554IPR001356Homeobox domain
SMARTSM005711.1E-10352411IPR018501DDT domain
PROSITE profilePS5082712.536352411IPR018501DDT domain
PfamPF027916.0E-9355406IPR018501DDT domain
PfamPF156124.2E-9630670IPR028942WHIM1 domain
PfamPF156137.0E-11751824IPR028941WHIM2 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 1115 aa     Download sequence    Send to blast
MKRKSPEQVQ ALEAFYLAEK MYPTSREMED LGKSLGLTVK EVSGWFKRRR SRGKGVKSLA  60
DNGVGTENPQ SYNPSRIRSS TSSRCDLIAG VEKRCNVGIK KANCQGLLTS QHILAKIFRK  120
DGPSLGSEFD HLPSGARKAS WLGTSSVDQQ KQRMARKRKI SELMDHTRPD CIREKTVKKH  180
GIGKGLMTVW RVMNPNRRNV SPCVDLLDAR ATLPQSSARK PPHRKKKQKQ LASILKQKLL  240
QKRSTEKKRC SINREVTLNK DETQKAFKEN CELAADREVF KETCQTISIL MDDEELEMRE  300
RQERGNPLTC SCHHPSSGPR GCFLCKDLLP KFPPNSVQMR MPFGLHPWNS SPEPVKKLFK  360
VVHFLYTYSV TLDICPFTLD EFTRAFHDKD SFLLGKIHLS LLKLLLLDVE TELQRGSFSN  420
LNISCKFLAL LQSVESQILI LDMWKDLLNS LTWTEILRQI LVAAGYGTLK CAVQSEELSK  480
ERRLMKKYGL RLGTLKGELF RMLNEQGNNG LEISELANAP EVAVLNLATA QEERENSICS  540
TLASDITLFE KISESTYRVR VNCFSEDPDK SQSDSDVSGS VDDEDCSSSS GDEVERVSEN  600
PALRKVKYRK RQRHKSKMRE VYSEIDESHP GEPWLLGLME GEYSDLSIEE KLDVLVALID  660
LLSSGSTIRM EDIPRAMVDC APSIYSHGSG GKIKRSSFNQ YRRGSWVHGG ELHGTQALTK  720
SSDSHPVDSS SIVGAFAKLA GEKANNVHPM QSVYLGSDRR FNRYWLFLGP CSLNDPGHRC  780
VFFESSEDGH WEVLDNKEAL RALLSVLDDR GRREARLIES LEKRESFLCQ AMLSRQMAQS  840
ETAHFTDIVR EDSSSPVSDI DNNLCPSEIA NDQVSSQHAA IVFEIGSKRE KSLLWSLLQE  900
FDEWIWADFN FNLNAVKHRR RSYLDSLTRC KSCHDLYWRD EKHCKICHTT FEVDIDLEER  960
YAIHAATCRR KEECDAFPDH KILSSQLQSL KAAVYAIESA MPEDALIGAW RKSAHRLWAK  1020
RLRRSSTVSE ITQVIGDFVG AINEDWLWHS SDQAHSLLGE TISCFPSMPQ TTSAMALWLV  1080
KLDTLIAPFV EKAHPERNQL FCRTRNTSRR ASTT*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator required for the maintenance of the plant vegetative phase. May prevent the early activation of the vegetative-to-reproductive transition by regulating key genes that contribute to flower timing. {ECO:0000250|UniProtKB:F4HY56}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCarubv10004029m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAL0496400.0AL049640.1 Arabidopsis thaliana DNA chromosome 4, BAC clone T20K18 (ESSA project).
GenBankAL1615340.0AL161534.2 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 34.
GenBankCP0026870.0CP002687.1 Arabidopsis thaliana chromosome 4 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006283038.10.0homeobox-DDT domain protein RLT3 isoform X1
SwissprotF4JRF50.0RLT3_ARATH; Homeobox-DDT domain protein RLT3
TrEMBLR0F3L10.0R0F3L1_9BRAS; Uncharacterized protein
STRINGXP_006283038.10.0(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM96382125
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G12750.10.0Homeodomain-like transcriptional regulator