PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Carubv10003996m

Common Name

CARUB_v10003996mg

Organism

Capsella rubella

Taxonomic ID

81985

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella

Family

bHLH

Protein Properties

Length: 1333aa MW: 153382 Da PI: 5.0903

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Carubv10003996m	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	36.6	8.2e-12	1179	1225	3	54
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 ++h+ +ErrRR riN f++Lr++lP++ K +Ka++L ++v+Y ++L Carubv10003996m 1179 KKHSDAERRRRLRINCQFATLRTILPNL-----VKQDKASVLGETVRYFNEL 1225 68***********************9.....7************9988 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	7.85E-12	1168	1231	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	15.008	1176	1225	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	4.41E-7	1179	1230	No hit	No description
Gene3D	G3DSA:4.10.280.10	2.4E-12	1179	1230	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	1.4E-9	1179	1225	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	4.6E-12	1182	1231	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005739	Cellular Component	mitochondrion
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 1333 aa Download sequence Send to blast
MEKVYEELDE VKAANEKLRM DYRNKTEILD NLKKVQKEQL VDIREARLVN EKQCFEIEEK 60 TRDVSELKRA NEDLQRCLRE KDSVLKRVND ANDKLRANGE DKYRELEEEK RSMMSALDEA 120 TEKNIDLEQE NNVYRAEIEG LKGLLGAAEK KRIQVEKTVE AMKEMRGRDD MVIKMEEEKA 180 QVEEKLKWKK EQFKHLEEAY EKLQNLFKAS KKEWEEEKST LLDEIYSLQA KLDSLTRISE 240 DLQKKLQMSN SALTQEETRR KRLEVQVSEF KTRYEDAFAE YKDARTQLDD LAGKRDEEVA 300 ELRQSLSMKD TYLKEMKYEN GKLEQENQEL LGSLKELQEA TIQGSGNSAL SKLKNKFRNL 360 ENIHKTCSAN LRSKEAEWSS RLDKMAEEIN DYQLRLQSKE EALKDVELEL ENCHSSAAKV 420 RLQYEEISVM FLVLSRTVSE AQSRLANVKD EQIKDEKREE KSYSLLMEQL DQKNAALAKA 480 HLEIEEERER VACLLKRIDM LDLIEDQKIQ MEKEVERYKE MVEESSRFQT QMKEKLEEAE 540 NDYEEKLLQV CDALDNTNSD LVSEREKVVA LTRQIESFGF VKEKNLVMEK EIEKYKEMLE 600 ESQKSRVLLE EQISQLESDS KENIRELCSK VDIAYAKLAE EVEKTTSLVR KSEAIDLNEE 660 NREQELDNYK GRLEESTKSQ LRLQEKVVEV ENDSKRKLAD VSEALETANS ELSDKTSEVY 720 QIEFQLWIWK SIAKRLKAEL EQNQNLRKRV EASLIEQVGV GEAIMQERNE LMHKLKSINS 780 TRSSVSEIET LMRDKDDILE NLQRELELLE QESLSRELED VFIAHTIAET ELQKEREIFA 840 GALQQKEQDL REVKHKWEGS FKSVSLLLAE EQNKVNMLHK AWEKLSATQI LTAVESESKK 900 MMIIELEGEI FSLSKKLKAS GENASCFRQE ATKLGAELET KQRELKEVTT QMQVKLKTSE 960 AEKTELVKEV ASLSSEKGNL LSFISAMEDG MLKLCDGDTK LMKTLERVTQ CCDGFGKENN 1020 NGETTGSPRL AMKHEDAVIE DSYYLLVSCP YITSYYMFSS FSLYVHTAKS AFPLLFLPSL 1080 CYFFSHHQSN MFSSYSVAEP IICCIACVVC LMQLEQGVRP ISRCYNPNPT TYPTTIGRNI 1140 FFPGAGAGAG AATSSKLFSR GFSVTKPKPK TESKEAAAKK HSDAERRRRL RINCQFATLR 1200 TILPNLVKQD KASVLGETVR YFNELKKMVQ DIPTTPSLED SLRLGHCNNN RDLARVVFSC 1260 SDREGLMSEV AESLKAAKTK AVRAEIMTVG GRTKCALFVQ GVNGNEGLVK LKKSLKPVVN 1320 GKISSEAKEQ HQ*

Sequence ? help Back to Top

Protein Sequence Length: 1333 aa Download sequence Send to blast

MEKVYEELDE VKAANEKLRM DYRNKTEILD NLKKVQKEQL VDIREARLVN EKQCFEIEEK  60
TRDVSELKRA NEDLQRCLRE KDSVLKRVND ANDKLRANGE DKYRELEEEK RSMMSALDEA  120
TEKNIDLEQE NNVYRAEIEG LKGLLGAAEK KRIQVEKTVE AMKEMRGRDD MVIKMEEEKA  180
QVEEKLKWKK EQFKHLEEAY EKLQNLFKAS KKEWEEEKST LLDEIYSLQA KLDSLTRISE  240
DLQKKLQMSN SALTQEETRR KRLEVQVSEF KTRYEDAFAE YKDARTQLDD LAGKRDEEVA  300
ELRQSLSMKD TYLKEMKYEN GKLEQENQEL LGSLKELQEA TIQGSGNSAL SKLKNKFRNL  360
ENIHKTCSAN LRSKEAEWSS RLDKMAEEIN DYQLRLQSKE EALKDVELEL ENCHSSAAKV  420
RLQYEEISVM FLVLSRTVSE AQSRLANVKD EQIKDEKREE KSYSLLMEQL DQKNAALAKA  480
HLEIEEERER VACLLKRIDM LDLIEDQKIQ MEKEVERYKE MVEESSRFQT QMKEKLEEAE  540
NDYEEKLLQV CDALDNTNSD LVSEREKVVA LTRQIESFGF VKEKNLVMEK EIEKYKEMLE  600
ESQKSRVLLE EQISQLESDS KENIRELCSK VDIAYAKLAE EVEKTTSLVR KSEAIDLNEE  660
NREQELDNYK GRLEESTKSQ LRLQEKVVEV ENDSKRKLAD VSEALETANS ELSDKTSEVY  720
QIEFQLWIWK SIAKRLKAEL EQNQNLRKRV EASLIEQVGV GEAIMQERNE LMHKLKSINS  780
TRSSVSEIET LMRDKDDILE NLQRELELLE QESLSRELED VFIAHTIAET ELQKEREIFA  840
GALQQKEQDL REVKHKWEGS FKSVSLLLAE EQNKVNMLHK AWEKLSATQI LTAVESESKK  900
MMIIELEGEI FSLSKKLKAS GENASCFRQE ATKLGAELET KQRELKEVTT QMQVKLKTSE  960
AEKTELVKEV ASLSSEKGNL LSFISAMEDG MLKLCDGDTK LMKTLERVTQ CCDGFGKENN  1020
NGETTGSPRL AMKHEDAVIE DSYYLLVSCP YITSYYMFSS FSLYVHTAKS AFPLLFLPSL  1080
CYFFSHHQSN MFSSYSVAEP IICCIACVVC LMQLEQGVRP ISRCYNPNPT TYPTTIGRNI  1140
FFPGAGAGAG AATSSKLFSR GFSVTKPKPK TESKEAAAKK HSDAERRRRL RINCQFATLR  1200
TILPNLVKQD KASVLGETVR YFNELKKMVQ DIPTTPSLED SLRLGHCNNN RDLARVVFSC  1260
SDREGLMSEV AESLKAAKTK AVRAEIMTVG GRTKCALFVQ GVNGNEGLVK LKKSLKPVVN  1320
GKISSEAKEQ HQ*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Carubv10003996m

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AL035538	0.0	AL035538.1 Arabidopsis thaliana DNA chromosome 4, BAC clone F20D10 (ESSA project).
GenBank	AL161592	0.0	AL161592.2 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 88.
GenBank	CP002687	0.0	CP002687.1 Arabidopsis thaliana chromosome 4 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_023634603.1	0.0	uncharacterized protein At4g38062
Swissprot	P0CB23	0.0	Y4862_ARATH; Uncharacterized protein At4g38062
TrEMBL	R0GUB7	0.0	R0GUB7_9BRAS; Uncharacterized protein
STRING	XP_006283007.1	0.0	(Capsella rubella)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM9592	6	6

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38070.1	0.0	bHLH family protein

Link Out ? help Back to Top
Phytozome	Carubv10003996m
Entrez Gene	17877586