PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Carubv10003817m
Common NameCARUB_v10003817mg
Organism
Capsella rubella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family NAC
Protein Properties Length: 243aa    MW: 28355.7 Da    PI: 4.7324
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Carubv10003817mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM36.81.2e-112510630128
              NAM  30 leev.ikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWv 122
                      + +v i++v+iyk++P++L  ++++ ++e +fF++++ k+                 +gk++++ + ++++vg kk+  + ++r+p+g+ktdW+
  Carubv10003817m  25 F-DVpIHHVNIYKSDPQQLSVEYEKANDEAWFFITERYKKG---------------ISGKKHKLAD-DNATVGAKKIERY-RARKPHGVKTDWL 100
                      4.455**************9666665555556655443322...............3577777887.8889999998666.69*********** PP

              NAM 123 mheyrl 128
                      mhey+ 
  Carubv10003817m 101 MHEYSY 106
                      ****86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100511.711127IPR003441NAC domain
SuperFamilySSF1019411.96E-1818127IPR003441NAC domain
PfamPF023651.6E-439105IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 243 aa     Download sequence    Send to blast
MINLEPRGQC YSNPDDRTYH YPQPFDVPIH HVNIYKSDPQ QLSVEYEKAN DEAWFFITER  60
YKKGISGKKH KLADDNATVG AKKIERYRAR KPHGVKTDWL MHEYSYESPH DDDNDKVEYV  120
LCKIYLTPSA VKRMKDNEKE KVKKGKGKLK EKVKQLEQPQ CCLPSAQDQE PKSLPYNIDD  180
DDLKDFDEFF DFVDSEPQLE DVEEFFAEFM KPNSVVGDEE DVPKDSDILE GFFNDGMMKD  240
LH*
Cis-element ? help Back to Top
SourceLink
PlantRegMapCarubv10003817m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006290149.11e-180NAC transcription factor 29
TrEMBLR0FKT71e-178R0FKT7_9BRAS; Uncharacterized protein
STRINGXP_006290149.11e-179(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM27931563
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G56530.16e-36NAC domain containing protein 64