PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Carubv10003768m
Common NameCARUB_v10003768mg
Organism
Capsella rubella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family NAC
Protein Properties Length: 624aa    MW: 69919.1 Da    PI: 4.5002
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Carubv10003768mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM54.73.3e-172573150
              NAM  1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkk 50
                     l+pGfrFhP+deel+++yLk+kv+gk ++l ++i e+diyk+ePw+L   
  Carubv10003768m 25 LAPGFRFHPSDEELISYYLKRKVQGKLMRL-DAIGEIDIYKHEPWNLAVF 73
                     579*************************99.99**************743 PP
2NAM98.88.1e-3113621350128
              NAM  50 kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                      k+k+++ ewyfFs  dkky++g+++nrat++gyWk+tgkd+e+ + + ++vg+kktLv++kgrap+ge+t+Wvmheyrl
  Carubv10003768m 136 KLKSRDLEWYFFSMLDKKYSNGSKTNRATEKGYWKTTGKDREIRN-GPRVVGMKKTLVYHKGRAPRGERTNWVMHEYRL 213
                      4566778*************************************9.999****************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019415.62E-161975IPR003441NAC domain
PROSITE profilePS5100542.78625257IPR003441NAC domain
PfamPF023651.2E-2627213IPR003441NAC domain
SuperFamilySSF1019411.57E-32137220IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009644Biological Processresponse to high light intensity
GO:0009962Biological Processregulation of flavonoid biosynthetic process
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0016021Cellular Componentintegral component of membrane
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 624 aa     Download sequence    Send to blast
MDRDSKKPGV ALPAATGNAA AETSLAPGFR FHPSDEELIS YYLKRKVQGK LMRLDAIGEI  60
DIYKHEPWNL AVFLKENPGE CIGSRYAPFL EQEWDDDGER AVTPVPLVVQ VFCFFLYTLF  120
VWPFGLLYSK RERKSKLKSR DLEWYFFSML DKKYSNGSKT NRATEKGYWK TTGKDREIRN  180
GPRVVGMKKT LVYHKGRAPR GERTNWVMHE YRLSDEDLKK AGVPQKSGTG PKNGEQYGAP  240
FLEEEWEEDA MTYVPDQDAF SEGLGVDDDV YVDIDDNEEK PENLVVYDAV PILPNYCHGE  300
SSNNVESGNY SDSGNYIQQG NYVVDSGGYF EQPVETFEED KKPIIRDGSI QPCSLFPEDQ  360
IGCGVQDENA VNNLDSSNNN VFDADTCYSD IPIDTNYLPD EPFMDPNNNL PLNDGLYLET  420
NDLSCVQQDD FNFEDYLNFC DDEGFILDDS QFMGSEDALP DQEGLDQKVM VRYSLIHRKA  480
NHLIDSDPSK TKSAASKYPF LKKTSHMLGA IPAPSSFASQ FKSKDAAIRL HSAQSSGSVH  540
VTAGMIRISN MTLAADSSMG WSYDKNGNLN VVLSFGVVQR DDELSASGSK TATTATRAML  600
IFMCLWVLLL SVSFKIVTMV SAR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A8e-30182138140Stress-induced transcription factor NAC1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator activated by proteolytic cleavage through regulated intramembrane proteolysis (RIP) (By similarity). Transcripition activator associated with the induction of genes related to flavonoid biosynthesis and required for the accumulation of anthocyanins in response to high light stress (PubMed:19887540). Plays a role in the regulation of 20S and 26S proteasomes in response to high light stress (PubMed:21889048). {ECO:0000250|UniProtKB:Q949N0, ECO:0000269|PubMed:19887540, ECO:0000269|PubMed:21889048}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00059PBMTransfer from AT5G04410Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapCarubv10003768m
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By exposure to high light (PubMed:19887540). Induced by heat and methyl methanesulfonate (MMS) treatment (PubMed:17158162). {ECO:0000269|PubMed:17158162, ECO:0000269|PubMed:19887540}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY0996090.0AY099609.1 Arabidopsis thaliana putative protein (At5g04410) mRNA, complete cds.
GenBankAY1288590.0AY128859.1 Arabidopsis thaliana putative protein (At5g04410) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023635794.10.0NAC domain-containing protein 78 isoform X2
SwissprotQ84K000.0NAC78_ARATH; NAC domain-containing protein 78
TrEMBLR0FD080.0R0FD08_9BRAS; Uncharacterized protein
STRINGXP_006286823.10.0(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM31922762
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G04410.10.0NAC domain containing protein 2
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Liang M, et al.
    Subcellular Distribution of NTL Transcription Factors in Arabidopsis thaliana.
    Traffic, 2015. 16(10): p. 1062-74
    [PMID:26201836]
  4. Xiao D, et al.
    SENESCENCE-SUPPRESSED PROTEIN PHOSPHATASE Directly Interacts with the Cytoplasmic Domain of SENESCENCE-ASSOCIATED RECEPTOR-LIKE KINASE and Negatively Regulates Leaf Senescence in Arabidopsis.
    Plant Physiol., 2015. 169(2): p. 1275-91
    [PMID:26304848]
  5. Gladman NP,Marshall RS,Lee KH,Vierstra RD
    The Proteasome Stress Regulon Is Controlled by a Pair of NAC Transcription Factors in Arabidopsis.
    Plant Cell, 2016. 28(6): p. 1279-96
    [PMID:27194708]
  6. Tang Y,Zhao CY,Tan ST,Xue HW
    Arabidopsis Type II Phosphatidylinositol 4-Kinase PI4Kγ5 Regulates Auxin Biosynthesis and Leaf Margin Development through Interacting with Membrane-Bound Transcription Factor ANAC078.
    PLoS Genet., 2016. 12(8): p. e1006252
    [PMID:27529511]