PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Carubv10003683m
Common NameCARUB_v10003683mg
Organism
Capsella rubella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family bHLH
Protein Properties Length: 297aa    MW: 33476.1 Da    PI: 4.2715
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Carubv10003683mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH19.91.4e-061722101255
                      HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH  12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      R +++ +++  L++l+ +      +K + a++L +AveYIk Lq
  Carubv10003683m 172 RKEKLGDRITALQQLVSPF-----GKTDTASVLNEAVEYIKFLQ 210
                      677888999*******998.....8******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088812.277160209IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.02E-7170213No hitNo description
SuperFamilySSF474592.09E-11170218IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003536.6E-4171215IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.9E-10174218IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 297 aa     Download sequence    Send to blast
MTEEFEIAGI STGTWWSSPT NTAAVFSGYS LPRSTEISLD ATNFGWQNIE NKINDHNDGF  60
MNMHNSFFEG FFDPNEQVLS DSWTNTTTPN TKPALLESFP LFDNMFLIDS EAESFLDNEI  120
RIHKYKEQNT QDSKIRSDKP EELEENSDEY SPRLLKRPRL ETLSPLPSFK VRKEKLGDRI  180
TALQQLVSPF GKTDTASVLN EAVEYIKFLQ EQVTVLSNPE QNTIGSVQQQ QCSDKKPISS  240
TQEEEEECSS RRHVDLASRG LCLMPISASY PVAAAAASAE EMNTSDFWNL PFCLNL*
Cis-element ? help Back to Top
SourceLink
PlantRegMapCarubv10003683m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023636444.10.0transcription factor bHLH114
SwissprotQ9M0X81e-156BH114_ARATH; Transcription factor bHLH114
TrEMBLR0FKE10.0R0FKE1_9BRAS; Uncharacterized protein
STRINGXP_006290049.10.0(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM144281719
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G05170.11e-112bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]