PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Carubv10003260m
Common NameCARUB_v10003260mg
Organism
Capsella rubella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family NAC
Protein Properties Length: 436aa    MW: 49391.8 Da    PI: 7.0645
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Carubv10003260mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM130.89.8e-4161353128
              NAM   3 pGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp..kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevls 94 
                      +G+rF+Pt eel+++yLk+k+ gk+  ++e+i e++i+++eP  Lp  +k+++++  wyfFs+++ ++ ++k  +r+t+sgyWkatg d+++++
  Carubv10003260m   6 VGYRFSPTGEELINHYLKNKILGKNWLVDEAIGEINICNYEPFYLPslSKIQSDDLVWYFFSPKEYTSVKKKVIKRTTSSGYWKATGVDRKIKD 99 
                      7************************999999***************5448888888************************************** PP

              NAM  95 k..kgelvglkktLvfykgrapkgektdWvmheyrl 128
                      k  ++ ++g+kktLv+y+gr p+g+ t Wvmhey++
  Carubv10003260m 100 KrgNRGEIGIKKTLVYYEGRVPNGVWTPWVMHEYHI 135
                      9666667***************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100544.4974153IPR003441NAC domain
SuperFamilySSF1019412.35E-445153IPR003441NAC domain
PfamPF023651.1E-236135IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005886Cellular Componentplasma membrane
GO:0016021Cellular Componentintegral component of membrane
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 436 aa     Download sequence    Send to blast
MVKDLVGYRF SPTGEELINH YLKNKILGKN WLVDEAIGEI NICNYEPFYL PSLSKIQSDD  60
LVWYFFSPKE YTSVKKKVIK RTTSSGYWKA TGVDRKIKDK RGNRGEIGIK KTLVYYEGRV  120
PNGVWTPWVM HEYHITCLPP DQRNYVICQV MYKGEDGDIP TGGNYSSEPS QSFVSDSNTV  180
RATINTEPKV SPFEQRGQEN IFGMSVDDLR SPMNRQEDHS LWDVLDPDMF FSANKNPTLL  240
PQAPHLAPND DEFLGGLRHV DREQVEYLFA NEEFTSRPTT SMQENRNDHR PKRPLSGIIH  300
EYSCDTDSDA ESISATSYQG TSSPGDSVGS SNRRSQTGLD EIISLSKDIQ TSHEPSISKK  360
TIPSKMKQDS SRAAYAPVHK ESSSMVKPEK VWFITEKAME VNRKKSPRSI YFMRMVIGFI  420
LLLAVIGNII SVLLT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A1e-24715320165NO APICAL MERISTEM PROTEIN
1ut4_B1e-24715320165NO APICAL MERISTEM PROTEIN
1ut7_A1e-24715320165NO APICAL MERISTEM PROTEIN
1ut7_B1e-24715320165NO APICAL MERISTEM PROTEIN
3swm_A1e-24715323168NAC domain-containing protein 19
3swm_B1e-24715323168NAC domain-containing protein 19
3swm_C1e-24715323168NAC domain-containing protein 19
3swm_D1e-24715323168NAC domain-containing protein 19
3swp_A1e-24715323168NAC domain-containing protein 19
3swp_B1e-24715323168NAC domain-containing protein 19
3swp_C1e-24715323168NAC domain-containing protein 19
3swp_D1e-24715323168NAC domain-containing protein 19
4dul_A1e-24715320165NAC domain-containing protein 19
4dul_B1e-24715320165NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator activated by proteolytic cleavage through regulated intramembrane proteolysis (RIP). Involved in salt stress response during seed germination and seedling growth. Binds the auxin-responsive IAA30 gene promoter and may serve as a molecular link that interconnects a developmental feedback loop of auxin signaling with a salt signal transduction pathway during seed germination (PubMed:21450938). {ECO:0000269|PubMed:21450938}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00426DAPTransfer from AT4G01550Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapCarubv10003260m
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salt stress and abscisic acid (ABA) in roots. {ECO:0000269|PubMed:21450938}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023637654.10.0NAC domain-containing protein 69
SwissprotQ9M1260.0NAC69_ARATH; NAC domain-containing protein 69
TrEMBLR0GRZ70.0R0GRZ7_9BRAS; Uncharacterized protein
STRINGXP_006286761.10.0(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM19821971
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G01550.10.0NAC domain containing protein 69
Publications ? help Back to Top
  1. Liang M, et al.
    Subcellular Distribution of NTL Transcription Factors in Arabidopsis thaliana.
    Traffic, 2015. 16(10): p. 1062-74
    [PMID:26201836]
  2. He L, et al.
    Arabidopsis ANAC069 binds to C[A/G]CG[T/G] sequences to negatively regulate salt and osmotic stress tolerance.
    Plant Mol. Biol., 2017. 93(4-5): p. 369-387
    [PMID:27975189]