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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Carubv10003231m | ||||||||
Common Name | CARUB_v10003231mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
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Family | MYB | ||||||||
Protein Properties | Length: 329aa MW: 36699.4 Da PI: 10.1665 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 27.7 | 6.4e-09 | 12 | 58 | 3 | 47 |
SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwqky 47 +W+ +Ed + +a + + + +W++Ia ++ g+t +q++++++ + Carubv10003231m 12 SWSRDEDIAFERALAIYADEnenRWEKIALVVP-GKTKEQIIEHYNVL 58 7****************999*************.***********976 PP | |||||||
2 | Myb_DNA-binding | 41.2 | 3.8e-13 | 118 | 162 | 3 | 47 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +WT E+ +++ + +++G+g+W++I+r++ ++Rt q+ s+ qky Carubv10003231m 118 PWTSTEHRQFLLGLEKFGKGDWRSISRHFVLTRTSTQVASHAQKY 162 7*******************************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51293 | 9.551 | 8 | 63 | IPR017884 | SANT domain |
SMART | SM00717 | 3.8E-10 | 9 | 61 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 1.64E-11 | 11 | 67 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 1.4E-5 | 11 | 60 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.95E-10 | 12 | 59 | No hit | No description |
Pfam | PF00249 | 1.8E-7 | 12 | 58 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 3.4E-10 | 109 | 165 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 15.686 | 110 | 167 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.5E-15 | 112 | 167 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 4.9E-15 | 114 | 165 | IPR006447 | Myb domain, plants |
SMART | SM00717 | 9.2E-9 | 115 | 165 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.44E-8 | 118 | 162 | No hit | No description |
Pfam | PF00249 | 3.2E-10 | 118 | 162 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 329 aa Download sequence Send to blast |
MILGENVSVG SSWSRDEDIA FERALAIYAD ENENRWEKIA LVVPGKTKEQ IIEHYNVLVR 60 DVTMIESGLV PLPACFGFSE EPNHNASGQG KSALEYGEYH RKTHDKSKPK QTRKRGIPWT 120 STEHRQFLLG LEKFGKGDWR SISRHFVLTR TSTQVASHAQ KYYQRLNSKN KHKNRASIHD 180 VTVAGDKPKQ RAITWQTFAS TSNNQLIQPA SQPSLELPIH GRRNIWNTQA TQAISQPPAL 240 NHPTAYGVPT TIWNAATLQP SANFHVYGTP TISQPMVGPM LSPFGTNMNR LAQPHMTSGV 300 HFVPSYSGPN APINMGSIPY DIKPKDRS* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2cjj_A | 1e-13 | 10 | 73 | 8 | 71 | RADIALIS |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Carubv10003231m |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB025633 | 3e-37 | AB025633.2 Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MQM1. | |||
GenBank | CP002688 | 3e-37 | CP002688.1 Arabidopsis thaliana chromosome 5 sequence. | |||
GenBank | DQ056685 | 3e-37 | DQ056685.1 Arabidopsis thaliana myb family transcription factor (At5g23650) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006289672.1 | 0.0 | transcription factor SRM1 | ||||
TrEMBL | R0HC28 | 0.0 | R0HC28_9BRAS; Uncharacterized protein | ||||
STRING | XP_006289672.1 | 0.0 | (Capsella rubella) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM13391 | 16 | 28 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G23650.1 | 1e-140 | Homeodomain-like transcriptional regulator |
Link Out ? help Back to Top | |
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Phytozome | Carubv10003231m |
Entrez Gene | 17881806 |