PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Carubv10002791m | ||||||||
Common Name | CARUB_v10002791mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
|
||||||||
Family | NAC | ||||||||
Protein Properties | Length: 144aa MW: 17376.1 Da PI: 9.9182 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 65.4 | 1.7e-20 | 35 | 139 | 3 | 111 |
NAM 3 pGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknr.atksgyWkatgkdkevlsk 95 GfrFhP+d+ l+ +yL++kv++ + + +e +++diy ePw+L ++e+ F++++ ++t + + + t +g Wk+ gk ++v+sk Carubv10002791m 35 IGFRFHPRDHVLIRYYLEPKVAKIPKKKFELEDKTDIYAKEPWQLT------HTETDLFVPNEWWETTHEPQVKgETCEGCWKTLGKLRDVVSK 122 6************************9998988999**********6......356667888888888776666669*****************9 PP NAM 96 .kgelvglkktLvfykg 111 ++e++g k++L fy + Carubv10002791m 123 dTREVIGKKRSLSFYVK 139 77788**********43 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF02365 | 2.9E-4 | 16 | 35 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 22.675 | 33 | 143 | IPR003441 | NAC domain |
SuperFamily | SSF101941 | 1.29E-18 | 35 | 142 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.1E-10 | 35 | 139 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 144 aa Download sequence Send to blast |
MTMVAKYNEK KQHKVWFRFH PRDHELIHYY LRPKIGFRFH PRDHVLIRYY LEPKVAKIPK 60 KKFELEDKTD IYAKEPWQLT HTETDLFVPN EWWETTHEPQ VKGETCEGCW KTLGKLRDVV 120 SKDTREVIGK KRSLSFYVKG ESK* |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Carubv10002791m |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_023635711.1 | 1e-81 | NAC domain-containing protein 78 | ||||
TrEMBL | R0H3P0 | 1e-101 | R0H3P0_9BRAS; Uncharacterized protein | ||||
STRING | XP_006286412.1 | 1e-102 | (Capsella rubella) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM14744 | 8 | 21 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G18300.1 | 5e-29 | NAC domain containing protein 88 |
Link Out ? help Back to Top | |
---|---|
Phytozome | Carubv10002791m |
Entrez Gene | 17882076 |