PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Carubv10002573m | ||||||||
Common Name | CARUB_v10002573mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
|
||||||||
Family | MYB | ||||||||
Protein Properties | Length: 342aa MW: 38570.7 Da PI: 6.372 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 56.6 | 6.1e-18 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEde+l+ ++++G g+W++ ++ g++R++k+c++rw +yl Carubv10002573m 14 KGPWTQEEDEKLIVHIQKHGHGSWRALPKQAGLNRCGKSCRLRWTNYL 61 79********************************************97 PP | |||||||
2 | Myb_DNA-binding | 56.4 | 6.6e-18 | 67 | 112 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg++T+eE++ +++++ +lG++ W++Ia ++ gRt++++k++w+++l Carubv10002573m 67 RGNFTEEEEQTIINLHSLLGNK-WSSIAGNLP-GRTDNEIKNYWNTHL 112 89********************.*********.************996 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 9.1E-27 | 5 | 64 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 17.445 | 9 | 61 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 5.29E-32 | 11 | 108 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 4.5E-15 | 13 | 63 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.2E-16 | 14 | 61 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 5.93E-12 | 16 | 61 | No hit | No description |
PROSITE profile | PS51294 | 27.774 | 62 | 116 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.1E-27 | 65 | 116 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.3E-16 | 66 | 114 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.0E-16 | 67 | 112 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.90E-12 | 69 | 112 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0009737 | Biological Process | response to abscisic acid | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 342 aa Download sequence Send to blast |
MGRSPCCDEN GLKKGPWTQE EDEKLIVHIQ KHGHGSWRAL PKQAGLNRCG KSCRLRWTNY 60 LRPDIKRGNF TEEEEQTIIN LHSLLGNKWS SIAGNLPGRT DNEIKNYWNT HLRKKLLQMG 120 IDPVTHRPRT DHLNVLAALP QLMAAAANFN SLLNLNQNVQ LDATSLAKAQ LIHNMIQVLS 180 NNNNTNNPSF SSSTMQNNNN LFGQSSYSEN QTIFGQSQSF SNILDENNHD HDDLMVKSQI 240 VDHPLDSLTS GPIQPDFHDD HNSLPLLVPA SPEDSKQPMI KKNDIGNYHH HPDHTTNPSS 300 SNSTFTQDHH QPWCDIIDDG ASDSYWKEII EQTCSEPWPF P* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h8a_C | 1e-30 | 12 | 116 | 25 | 128 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcription factor that acts as negative regulator of lateral root (LR) development. Required for normal auxin responses during LR development. May be part of a negative feedback loop stimulated specifically in the endodermis upon LR initiation to ensure that LRs are formed only in the correct place. {ECO:0000269|PubMed:24902892}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Carubv10002573m |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: Induced by abscisic acid (ABA), auxin and gravity in roots. {ECO:0000269|PubMed:24902892}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_006286654.1 | 0.0 | transcription repressor MYB6 | ||||
Swissprot | Q9S9Z2 | 3e-87 | MYB93_ARATH; Transcription factor MYB93 | ||||
TrEMBL | R0FBX1 | 0.0 | R0FBX1_9BRAS; Uncharacterized protein | ||||
STRING | XP_006286654.1 | 0.0 | (Capsella rubella) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4 | 28 | 2646 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G16770.2 | 1e-173 | myb domain protein 9 |
Link Out ? help Back to Top | |
---|---|
Phytozome | Carubv10002573m |
Entrez Gene | 17883798 |
Publications ? help Back to Top | |||
---|---|---|---|
|