PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Carubv10002472m
Common NameCARUB_v10002472mg
Organism
Capsella rubella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family WRKY
Protein Properties Length: 291aa    MW: 33020.4 Da    PI: 6.3704
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Carubv10002472mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY63.14.8e-20114173359
                      -SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS
             WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 
                      Dgy WrKYGqK +k+se+ rsYYrC+++   +C ++k+ ++ +++p v  +tY g+H+++
  Carubv10002472m 114 DGYLWRKYGQKCIKKSEHQRSYYRCSYNidhNCGARKHEQKIKDNPPVYRTTYFGHHTCK 173
                      9**************************9999***************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081119.359107175IPR003657WRKY domain
Gene3DG3DSA:2.20.25.804.0E-21107174IPR003657WRKY domain
SuperFamilySSF1182901.7E-20110174IPR003657WRKY domain
SMARTSM007748.8E-29112174IPR003657WRKY domain
PfamPF031063.7E-20114173IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009863Biological Processsalicylic acid mediated signaling pathway
GO:0042742Biological Processdefense response to bacterium
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 291 aa     Download sequence    Send to blast
MEMNSPHEKA VKAILYGHSC AMTLKRRLDH SKMAEAGPVS SYELAKSIVD CFSNAISILS  60
DKPKSEDDQF SVLSSRDSSP LPPPQGSPSK KRKIDNTNSS ANWRDDSPDP IYFDGYLWRK  120
YGQKCIKKSE HQRSYYRCSY NIDHNCGARK HEQKIKDNPP VYRTTYFGHH TCKTNHNLDA  180
IFTSVQEPLD DSKSAQMIHF GVKDLKKESP SNGFSLSVKH EEDIIISEQN MDQYRETTST  240
INDQDCQHVL SSPSGSYPPS SSSGSESAEF DPDLLFDNLD SWDRYDQFYF *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A2e-141141731069OsWRKY45
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00619PBMTransfer from AT5G22570Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapCarubv10002472m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006286633.10.0probable WRKY transcription factor 38
SwissprotQ8GWF11e-143WRK38_ARATH; Probable WRKY transcription factor 38
TrEMBLR0FCL80.0R0FCL8_9BRAS; Uncharacterized protein
STRINGXP_006286633.10.0(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM136731727
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G22570.11e-140WRKY DNA-binding protein 38
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Singh V,Roy S,Singh D,Nandi AK
    Arabidopsis flowering locus D influences systemic-acquired-resistance- induced expression and histone modifications of WRKY genes.
    J. Biosci., 2014. 39(1): p. 119-26
    [PMID:24499796]
  3. Janda M, et al.
    Phospholipase D affects translocation of NPR1 to the nucleus in Arabidopsis thaliana.
    Front Plant Sci, 2015. 6: p. 59
    [PMID:25741350]