PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella

Family

HD-ZIP

Protein Properties

Length: 237aa MW: 27070.6 Da PI: 8.886

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Carubv10002440m	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	58.4	1.2e-18	80	132	4	56
-SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 4 RttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 + ++t+ ql Le+ F+++ +++ +++ +L+++lgL+ rq+ vWFqNrRa++k Carubv10002440m 80 KKRLTSGQLASLERSFQEEIKLDSDRKVKLSRELGLQPRQIAVWFQNRRARWK 132 55699***********************************************9 PP
2	HD-ZIP_I/II	117	1.1e-37	79	169	2	92
HD-ZIP_I/II 2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 kk+rl++ q+++LE+sF+ee kL+++rKv+l+reLglqprq+avWFqnrRAR+k+kqlE+ y++L+++yda+++e+++L++ev++Lr+ l+ Carubv10002440m 79 KKKRLTSGQLASLERSFQEEIKLDSDRKVKLSRELGLQPRQIAVWFQNRRARWKAKQLEQLYDSLRQEYDAVSREKQMLHEEVKKLRAILR 169 9**************************************************************************************8776 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	4.15E-18	68	136	IPR009057	Homeodomain-like
PROSITE profile	PS50071	16.892	74	134	IPR001356	Homeobox domain
SMART	SM00389	1.1E-16	77	138	IPR001356	Homeobox domain
CDD	cd00086	7.05E-15	79	135	No hit	No description
Pfam	PF00046	4.4E-16	80	132	IPR001356	Homeobox domain
Gene3D	G3DSA:1.10.10.60	4.7E-19	81	141	IPR009057	Homeodomain-like
PRINTS	PR00031	4.2E-5	105	114	IPR000047	Helix-turn-helix motif
PROSITE pattern	PS00027	0	109	132	IPR017970	Homeobox, conserved site
PRINTS	PR00031	4.2E-5	114	130	IPR000047	Helix-turn-helix motif
Pfam	PF02183	5.9E-7	134	168	IPR003106	Leucine zipper, homeobox-associated

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009965	Biological Process	leaf morphogenesis
GO:0010434	Biological Process	bract formation
GO:0010582	Biological Process	floral meristem determinacy
GO:0045893	Biological Process	positive regulation of transcription, DNA-templated
GO:0048510	Biological Process	regulation of timing of transition from vegetative to reproductive phase
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 237 aa Download sequence Send to blast
MEWSTTSNVE NVRVAFMPPP WPESSSFNSL HSFSFDPYAG NLYTPPADTQ TGPVISVPEP 60 EKIMNAYRFP NSNNNEMMKK KRLTSGQLAS LERSFQEEIK LDSDRKVKLS RELGLQPRQI 120 AVWFQNRRAR WKAKQLEQLY DSLRQEYDAV SREKQMLHEE VKKLRAILRE QGLSKKPLSA 180 GTIKACSEED TEELPSVVVA HPRTENLNTG VNQVYRIDQY NNPMMVAASS GWSSYP*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	126	134	RRARWKAKQ

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription factor. {ECO:0000250}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00486	DAP	Transfer from AT5G03790	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Carubv10002440m

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	EU352029	1e-151	EU352029.1 Arabidopsis lyrata At5g03790-like protein gene, partial cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006289048.1	1e-176	putative homeobox-leucine zipper protein ATHB-51
Swissprot	Q9LZR0	1e-146	ATB51_ARATH; Putative homeobox-leucine zipper protein ATHB-51
TrEMBL	R0FIS6	1e-175	R0FIS6_9BRAS; Uncharacterized protein
STRING	XP_006289048.1	1e-176	(Capsella rubella)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1660	28	88

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G03790.1	1e-138	homeobox 51

Link Out ? help Back to Top
Phytozome	Carubv10002440m
Entrez Gene	17881884

Publications ? help Back to Top
Andres RJ, et al. Modifications to a LATE MERISTEM IDENTITY1 gene are responsible for the major leaf shapes of Upland cotton (Gossypium hirsutum L.). Proc. Natl. Acad. Sci. U.S.A., 2017. 114(1): p. E57-E66 [PMID:27999177] Vuolo F, et al. LMI1 homeodomain protein regulates organ proportions by spatial modulation of endoreduplication. Genes Dev., 2018. 32(21-22): p. 1361-1366 [PMID:30366902]