PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Carubv10001920m
Common NameCARUB_v10001920mg
Organism
Capsella rubella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family M-type_MADS
Protein Properties Length: 221aa    MW: 25163.3 Da    PI: 9.973
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Carubv10001920mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF60.61.8e-191052244
                     ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTS CS
           SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstg 44
                     +ien++ r+ tf kR++g+lKKA EL +LCd+ v+v++ s+ g
  Carubv10001920m 10 FIENETARKSTFKKRKKGLLKKADELATLCDVPVCVVVNSPYG 52
                     8**************************************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006619.596152IPR002100Transcription factor, MADS-box
SMARTSM004321.7E-27160IPR002100Transcription factor, MADS-box
CDDcd002667.05E-16285No hitNo description
SuperFamilySSF554552.75E-25295IPR002100Transcription factor, MADS-box
PRINTSPR004041.8E-12323IPR002100Transcription factor, MADS-box
PfamPF003196.5E-201052IPR002100Transcription factor, MADS-box
PRINTSPR004041.8E-122338IPR002100Transcription factor, MADS-box
PRINTSPR004041.8E-123859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 221 aa     Download sequence    Send to blast
MTRKKVKMAF IENETARKST FKKRKKGLLK KADELATLCD VPVCVVVNSP YGAAPEVWPS  60
RETANKVVAQ WSKMPVMDKT KKMVNQETYL QQRIAKATES WRKARKENKE LEMKNIMFDC  120
LSTKTSVPCI PKCDLPDFGS VIEQYLKDVN RRMEIMKRNE VEESSSSLVH AADVATTSTV  180
IPMLEMGSSS VGFHEKIRDQ IENTLNVKKT DKDLDLNKKW *
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1224RKKVKMAFIENETARKSTFKKRK
22125KKRKK
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. Controls central cell differentiation during female gametophyte development. Required for the expression of DEMETER and DD46, but not for the expression of FIS2 (PubMed:16798889). Probable transcription factor that may function in the maintenance of the proper function of the central cell in pollen tube attraction (Probable). {ECO:0000269|PubMed:16798889, ECO:0000305|PubMed:26462908}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCarubv10001920m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006286567.11e-162agamous-like MADS-box protein AGL80
SwissprotQ9FJK38e-56AGL80_ARATH; Agamous-like MADS-box protein AGL80
TrEMBLR0H4661e-161R0H466_9BRAS; Uncharacterized protein
STRINGXP_006286567.11e-162(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM7028415
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G26630.15e-89M-type_MADS family protein
Publications ? help Back to Top
  1. Zhang S, et al.
    FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development.
    Plant Physiol., 2018. 177(1): p. 285-299
    [PMID:29523711]