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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Carubv10001830m | ||||||||
Common Name | CARUB_v10001830mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
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Family | Trihelix | ||||||||
Protein Properties | Length: 244aa MW: 27699.3 Da PI: 6.0761 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 40.3 | 8.3e-13 | 23 | 105 | 2 | 86 |
trihelix 2 WtkqevlaLiearremeerlrrgklkkplWeevskkm..rergfer..spkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 W+++ + +L+ea ++ +l+ g+l++++W++v++ + r++ + r + +qCk++++ l+k+yk +k+ + st+++fd+l+ Carubv10001830m 23 WSEEATATLVEAWGNRYVKLNHGNLRQNDWKDVADTVnsRHGDYVRakTDVQCKNRIDTLKKKYKSEKAKLSP------STWRFFDRLD 105 *************************************97777786555999*****************99996......68*****997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF13837 | 1.7E-23 | 21 | 106 | No hit | No description |
Sequence ? help Back to Top |
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Protein Sequence Length: 244 aa Download sequence Send to blast |
METTPQSKAS GSHRPPLGRE DWWSEEATAT LVEAWGNRYV KLNHGNLRQN DWKDVADTVN 60 SRHGDYVRAK TDVQCKNRID TLKKKYKSEK AKLSPSTWRF FDRLDFLIGP VVKKSAGGVI 120 KSVPIVNPNH LNPAGSGSSL EDDDDDDDDE TGDWGFVARE HSRVEEIDLS EGSTCRELAT 180 AILKFGEVYE KIEGKKQQMM IELEKQRMEV IKEVELQRMN MLMEMQLEIE KSKLRKRGLG 240 SGM* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription regulator that may repress the maturation program during early embryogenesis. {ECO:0000269|PubMed:21330492}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00488 | DAP | Transfer from AT5G05550 | Download |
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Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Carubv10001830m |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006288549.1 | 0.0 | trihelix transcription factor ASIL2 | ||||
Swissprot | Q9LJG8 | 5e-30 | ASIL2_ARATH; Trihelix transcription factor ASIL2 | ||||
TrEMBL | R0FGL5 | 1e-180 | R0FGL5_9BRAS; Uncharacterized protein | ||||
STRING | XP_006288549.1 | 0.0 | (Capsella rubella) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4926 | 21 | 41 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G05550.1 | 1e-136 | sequence-specific DNA binding transcription factors |
Link Out ? help Back to Top | |
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Phytozome | Carubv10001830m |
Entrez Gene | 17883550 |