PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Carubv10001730m
Common NameCARUB_v10001730mg
Organism
Capsella rubella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family TCP
Protein Properties Length: 267aa    MW: 30212.5 Da    PI: 6.9718
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Carubv10001730mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP90.73.1e-2848126382
              TCP   3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec..eaesssssa 82 
                      g+kdrhsk+ T +g+RdRR+Rls+ +a++++dLq++LG+ ++sk i+WLl++ak  +  l+ +++++ s+   +    + s+
  Carubv10001730m  48 GGKDRHSKVFTVRGLRDRRIRLSVMTAIQVYDLQERLGLSQPSKVIDWLLEAAKNDVELLPPLQFPPGSFHqvN---PNLSQ 126
                      78*************************************************************99999655222...22222 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5136927.36549107IPR017887Transcription factor TCP subgroup
PfamPF036347.7E-2749155IPR005333Transcription factor, TCP
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009965Biological Processleaf morphogenesis
GO:0030154Biological Processcell differentiation
GO:0045962Biological Processpositive regulation of development, heterochronic
Sequence ? help Back to Top
Protein Sequence    Length: 267 aa     Download sequence    Send to blast
MEMGLNSSIE DIRFKQEVAD DHNQPSSLSL LRQRWNNPRI VRVSKTFGGK DRHSKVFTVR  60
GLRDRRIRLS VMTAIQVYDL QERLGLSQPS KVIDWLLEAA KNDVELLPPL QFPPGSFHQV  120
NPNLSQMGES FPGVFDLGSC SNRDNMDLDQ RKWARFDHNT SLDHGFDIDH HHFSNSIQSN  180
KLYFPTSTTT SASSSYHYNI GHLQQSLLDQ SGNVTVAFST NSNLNPPLAE TMNSLFPRYP  240
SFLGGGHQLQ LFNENSNSSN QRDHVE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zkt_A2e-1754108155Putative transcription factor PCF6
5zkt_B2e-1754108155Putative transcription factor PCF6
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPlays a pivotal role in the control of morphogenesis of shoot organs by negatively regulating the expression of boundary-specific genes such as CUC genes, probably through the induction of miRNA (e.g. miR164). Participates in ovule develpment (PubMed:25378179). {ECO:0000269|PubMed:17307931, ECO:0000269|PubMed:25378179}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00497DAPTransfer from AT5G08070Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapCarubv10001730m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006288467.10.0transcription factor TCP17
SwissprotQ9LEZ91e-122TCP17_ARATH; Transcription factor TCP17
TrEMBLR0H8V50.0R0H8V5_9BRAS; Uncharacterized protein
STRINGXP_006288467.10.0(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM35762763
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G08070.11e-119TCP domain protein 17
Publications ? help Back to Top
  1. Koyama T,Sato F,Ohme-Takagi M
    Roles of miR319 and TCP Transcription Factors in Leaf Development.
    Plant Physiol., 2017. 175(2): p. 874-885
    [PMID:28842549]