PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Carubv10001591m
Common NameCARUB_v10001591mg
Organism
Capsella rubella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family MYB_related
Protein Properties Length: 298aa    MW: 32630.6 Da    PI: 4.8762
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Carubv10001591mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding39.11.8e-125296147
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                     r +WT+ E++++++a +++  + Wk+I   +g  +t  q++s+ qky
  Carubv10001591m 52 RESWTEGEHDKFLEALQLFDRD-WKKIEDFVG-SKTVIQIRSHAQKY 96
                     789*****************77.*********.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466892.02E-1646102IPR009057Homeodomain-like
PROSITE profilePS5129414.94247101IPR017930Myb domain
TIGRFAMsTIGR015572.3E-185099IPR006447Myb domain, plants
Gene3DG3DSA:1.10.10.602.9E-650102IPR009057Homeodomain-like
SMARTSM007177.6E-105199IPR001005SANT/Myb domain
PfamPF002493.1E-105296IPR001005SANT/Myb domain
CDDcd001671.38E-75497No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007623Biological Processcircadian rhythm
GO:0009651Biological Processresponse to salt stress
GO:0009723Biological Processresponse to ethylene
GO:0009733Biological Processresponse to auxin
GO:0009737Biological Processresponse to abscisic acid
GO:0009739Biological Processresponse to gibberellin
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0046686Biological Processresponse to cadmium ion
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 298 aa     Download sequence    Send to blast
MTSTNLVVAE ALPSESITDA TEMNTTVSSV STEAGEAPEK KVRKAYTITK SRESWTEGEH  60
DKFLEALQLF DRDWKKIEDF VGSKTVIQIR SHAQKYFLKV QKNGTLAHVP PPRPKRKAAH  120
PYPQKASKNA QMSLHVSMSF PTQINNLPGY SSWDDDTSAL LNIAVSGVIP PEDELDTFCG  180
PEVVIESNDI PSASSPSASG IGSSSRTLSD SQDLRLAKQA PSMHGLPDFA EVYNFIGSVF  240
DPDSKGRMKK LKEMDPINFE TVLLLMRNLT VNLSNPDFEP ASEYVDAAEE GPEHLSS*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250, ECO:0000269|PubMed:17363273}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00484DAPTransfer from AT5G02840Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapCarubv10001591m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAJ9372090.0AJ937209.1 Arabidopsis thaliana mRNA for myb transcription factor LHY-CCA1-like1 (lcl1 gene).
GenBankAY5195140.0AY519514.1 Arabidopsis thaliana MYB transcription factor (At5g02840) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006288343.10.0protein REVEILLE 4 isoform X1
SwissprotQ6R0G40.0RVE4_ARATH; Protein REVEILLE 4
TrEMBLR0FGY30.0R0FGY3_9BRAS; Uncharacterized protein
STRINGXP_006288343.10.0(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM152131118
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G02840.21e-169LHY/CCA1-like 1
Publications ? help Back to Top
  1. Xing H, et al.
    LNK1 and LNK2 recruitment to the evening element require morning expressed circadian related MYB-like transcription factors.
    Plant Signal Behav, 2015. 10(3): p. e1010888
    [PMID:25848708]
  2. Gray JA,Shalit-Kaneh A,Chu DN,Hsu PY,Harmer SL
    The REVEILLE Clock Genes Inhibit Growth of Juvenile and Adult Plants by Control of Cell Size.
    Plant Physiol., 2017. 173(4): p. 2308-2322
    [PMID:28254761]