PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Carubv10001470m
Common NameCARUB_v10001470mg
Organism
Capsella rubella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family bHLH
Protein Properties Length: 322aa    MW: 36077.8 Da    PI: 7.5433
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Carubv10001470mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH44.42.9e-14118169155
                      CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      +r++h ++Er+RR+++N+ ++ Lr+l+P++     ++ + a+i+  A+++Ik+L+
  Carubv10001470m 118 QRMTHIAVERNRRRQMNEHLNSLRSLMPSS---FLQRGDQASIVGGAINFIKELE 169
                      79***************************9...89*****************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.31E-16116186IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.92E-12116173No hitNo description
Gene3DG3DSA:4.10.280.101.0E-13116173IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.434117168IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.1E-11118169IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003536.5E-11123174IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 322 aa     Download sequence    Send to blast
MGGLMRFGEL EEQFAQLSDT TVEEKIPFLQ MLQCMEPSFT TTEPNQFLQS LLQIQTLEPK  60
SCQYNLETTI KRDPGQTEDP EKDPRTENGS SAATVVVKEK RKRKRTRAPK NKDEVENQRM  120
THIAVERNRR RQMNEHLNSL RSLMPSSFLQ RGDQASIVGG AINFIKELEQ LLQTLESEKG  180
HDRTNETPKT ASSTSSSSRA CTNSSVSSVS TTSEDGFTAR FGGGETAEVE ATVIHNHVSL  240
KVRCKRGKGQ ILRAIVSIEE LKLVILHLTI SSSFDFVFYS FNLKIEDGCK LGSADLIATA  300
VHRIFEQING EMMWSNLSRR T*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1118129RMTHIAVERNRR
Cis-element ? help Back to Top
SourceLink
PlantRegMapCarubv10001470m
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by heat treatment. {ECO:0000269|PubMed:12679534}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY0997800.0AY099780.1 Arabidopsis thaliana putative bHLH DNA-binding protein (At4g01460) mRNA, complete cds.
GenBankAY1288810.0AY128881.1 Arabidopsis thaliana putative bHLH DNA-binding protein (At4g01460) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006288230.10.0transcription factor bHLH57
SwissprotQ9M1281e-179BH057_ARATH; Transcription factor bHLH57
TrEMBLR0HBR90.0R0HBR9_9BRAS; Uncharacterized protein
STRINGXP_006288230.10.0(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM146961721
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G01460.11e-162bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]