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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Carubv10001464m | ||||||||
Common Name | CARUB_v10001450mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
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Family | bZIP | ||||||||
Protein Properties | Length: 323aa MW: 34805.7 Da PI: 8.0879 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 35.2 | 2.7e-11 | 170 | 211 | 14 | 55 |
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 14 ReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkke 55 Re+ArrsR+RK+a + eLe+ v +L eN++L k l +++ Carubv10001464m 170 RESARRSRRRKQAHLSELETQVSQLRVENSKLMKGLTDVTQT 211 9*******************************9988776665 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00338 | 1.0E-8 | 162 | 221 | IPR004827 | Basic-leucine zipper domain |
SuperFamily | SSF57959 | 9.85E-8 | 170 | 210 | No hit | No description |
PROSITE profile | PS50217 | 8.691 | 170 | 210 | IPR004827 | Basic-leucine zipper domain |
Gene3D | G3DSA:1.20.5.170 | 8.3E-8 | 170 | 211 | No hit | No description |
Pfam | PF00170 | 2.2E-8 | 170 | 208 | IPR004827 | Basic-leucine zipper domain |
Pfam | PF12498 | 7.3E-12 | 228 | 277 | IPR020983 | Basic leucine-zipper, C-terminal |
Pfam | PF12498 | 1.7E-5 | 283 | 317 | IPR020983 | Basic leucine-zipper, C-terminal |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0071215 | Biological Process | cellular response to abscisic acid stimulus | ||||
GO:0071333 | Biological Process | cellular response to glucose stimulus | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0042802 | Molecular Function | identical protein binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 323 aa Download sequence Send to blast |
MEKVFSGEDI SGNINWSAVD GTTTTAMNRS ASEWAFHRFI QETSAAAADD DANAGDSTTT 60 TVCGVSVSSP PNVPVDSEEY RAFLKSKLNL ACAAVAMKRG SFIKPQDTSG RSDNGGVYTT 120 NTSEQGSLAS SKASPMMSSA ITSGSELSGD EEEADGETNM NPTNVKRVKR ESARRSRRRK 180 QAHLSELETQ VSQLRVENSK LMKGLTDVTQ TFNDAAVENR VLKANIETLR AKVKMAEETV 240 KRLTGFNPMF HTIPQIGTTV SLPTETSNSL DTTSSHVTTP EPVSSGNKSK GLIGCKMNRT 300 ASMRRVESLE HLQKRIRSVG DQ* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 173 | 180 | RRSRRRKQ |
2 | 175 | 180 | SRRRKQ |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor involved in controlling responses to starvation (PubMed:26263501). BZIP2-BZIP63-KIN10 complex binds to the ETFQO promoter to up-regulate its transcription (PubMed:29348240). {ECO:0000269|PubMed:26263501, ECO:0000269|PubMed:29348240}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00040 | PBM | Transfer from AT5G28770 | Download |
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Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Carubv10001464m |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Strongly repressed by glucose. {ECO:0000269|PubMed:18841482}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AJ010858 | 0.0 | AJ010858.1 Arabidopsis thaliana mRNA for bZIP protein BZ3. | |||
GenBank | AK317169 | 0.0 | AK317169.1 Arabidopsis thaliana AT5G28770 mRNA, complete cds, clone: RAFL21-54-H13. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_023636533.1 | 0.0 | basic leucine zipper 63 isoform X1 | ||||
Swissprot | B9DGI8 | 0.0 | BZP63_ARATH; Basic leucine zipper 63 | ||||
TrEMBL | R0FGM0 | 0.0 | R0FGM0_9BRAS; Uncharacterized protein | ||||
STRING | XP_006288214.1 | 0.0 | (Capsella rubella) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G28770.2 | 1e-150 | bZIP family protein |
Link Out ? help Back to Top | |
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Phytozome | Carubv10001464m |
Entrez Gene | 17883667 |
Publications ? help Back to Top | |||
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