PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Carubv10001373m | ||||||||
Common Name | CARUB_v10001373mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
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Family | NAC | ||||||||
Protein Properties | Length: 338aa MW: 38200.2 Da PI: 6.6011 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 179.7 | 7.6e-56 | 21 | 148 | 1 | 129 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevls 94 lppGfrFhPtdee++++yLk+kv ++++++ ++ e+d++k+ePwdLpk++k +eke yfF++rd+ky+tg r+nrat+sgyWkatgkdke+++ Carubv10001373m 21 LPPGFRFHPTDEEIITYYLKEKVLNSRFTA-VAMGEADLNKCEPWDLPKRAKMGEKEFYFFCQRDRKYPTGMRTNRATESGYWKATGKDKEIFK 113 79*************************999.67***************99999***************************************** PP NAM 95 kkgelvglkktLvfykgrapkgektdWvmheyrle 129 kg lvg+kktLvfy+grap+gekt+Wvmheyrle Carubv10001373m 114 GKGCLVGMKKTLVFYRGRAPRGEKTNWVMHEYRLE 148 9********************************85 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 8.76E-63 | 18 | 173 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 58.955 | 21 | 172 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.2E-29 | 22 | 147 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005737 | Cellular Component | cytoplasm | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 338 aa Download sequence Send to blast |
MAVVVEEGVV LNHGGEELVD LPPGFRFHPT DEEIITYYLK EKVLNSRFTA VAMGEADLNK 60 CEPWDLPKRA KMGEKEFYFF CQRDRKYPTG MRTNRATESG YWKATGKDKE IFKGKGCLVG 120 MKKTLVFYRG RAPRGEKTNW VMHEYRLEGK YSYHNLPKSA RDEWVVCRVF HKNNPSTTSQ 180 PMTRIPIEDL TRMDSLDNID HLLDFSSLPP LIDPSFTGQT EQANFKPINP PTYNNISSSP 240 IQPHHFNSYQ SIFNHQGFGS ASGSGSTYNN DMIKMEQSLV SVSQETCLSS DVNATTAATM 300 EVSSGPVMKQ EMGMMGMVNG SKSYEDLCDL RGILWDY* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 7e-52 | 8 | 174 | 2 | 170 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Binds to the promoter regions of genes involved in chlorophyll catabolic processes, such as NYC1, SGR1, SGR2 and PAO. {ECO:0000269|PubMed:27021284}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00518 | DAP | Transfer from AT5G18270 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Carubv10001373m |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK228369 | 0.0 | AK228369.1 Arabidopsis thaliana mRNA for no apical meristem (NAM) -like protein, complete cds, clone: RAFL14-80-C22. | |||
GenBank | BT005713 | 0.0 | BT005713.1 Arabidopsis thaliana clone RAFL14-80-C22 (R20123) putative NAM (no apical meristem) protein (At5g18270) mRNA, complete cds. | |||
GenBank | BT006070 | 0.0 | BT006070.1 Arabidopsis thaliana clone U20123 putative NAM (no apical meristem) protein (At5g18270) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006286525.1 | 0.0 | NAC domain-containing protein 87 | ||||
Swissprot | Q9FK44 | 0.0 | NAC87_ARATH; NAC domain-containing protein 87 | ||||
TrEMBL | R0H7A3 | 0.0 | R0H7A3_9BRAS; Uncharacterized protein | ||||
STRING | Cagra.0906s0022.1.p | 0.0 | (Capsella grandiflora) | ||||
STRING | XP_006286525.1 | 0.0 | (Capsella rubella) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2269 | 27 | 75 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G18270.1 | 0.0 | Arabidopsis NAC domain containing protein 87 |
Link Out ? help Back to Top | |
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Phytozome | Carubv10001373m |
Entrez Gene | 17884364 |
Publications ? help Back to Top | |||
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