PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Carubv10001279m | ||||||||
Common Name | CARUB_v10001279mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
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Family | CO-like | ||||||||
Protein Properties | Length: 356aa MW: 39542 Da PI: 6.3162 | ||||||||
Description | CO-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-B_box | 35.2 | 2.6e-11 | 52 | 97 | 3 | 42 |
zf-B_box 3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvpl 42 r+C+ +e+ ++ +fC+ + lC C +e+H+ H++vp+ Carubv10001279m 52 VRVCQSCERAPAAFFCKADAASLCIACDSEIHSAnplarrHQRVPI 97 689*****************************66899999**9997 PP | |||||||
2 | CCT | 66.3 | 8.4e-23 | 286 | 330 | 1 | 45 |
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqae 45 Rea++lRY+eK+k RkFeK+irY+sRKa+Ae+RpR+KGrF+k++e Carubv10001279m 286 REARVLRYREKKKMRKFEKTIRYASRKAYAEKRPRIKGRFAKRNE 330 9*****************************************975 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50119 | 10.381 | 7 | 54 | IPR000315 | B-box-type zinc finger |
SMART | SM00336 | 8.2E-6 | 7 | 54 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 2.28E-7 | 12 | 54 | No hit | No description |
PROSITE profile | PS50119 | 12.173 | 50 | 97 | IPR000315 | B-box-type zinc finger |
Pfam | PF00643 | 6.7E-9 | 52 | 97 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 3.34E-9 | 53 | 97 | No hit | No description |
SMART | SM00336 | 1.7E-11 | 55 | 97 | IPR000315 | B-box-type zinc finger |
PROSITE profile | PS51017 | 16.559 | 286 | 328 | IPR010402 | CCT domain |
Pfam | PF06203 | 7.6E-17 | 286 | 328 | IPR010402 | CCT domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0007623 | Biological Process | circadian rhythm | ||||
GO:0009909 | Biological Process | regulation of flower development | ||||
GO:0005622 | Cellular Component | intracellular | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0042802 | Molecular Function | identical protein binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 356 aa Download sequence Send to blast |
MLKEESNWAQ ACDSCRSAAC TVYCHADSAY LCTSCDAQIH AVNCLASRHE RVRVCQSCER 60 APAAFFCKAD AASLCIACDS EIHSANPLAR RHQRVPILPI SGNSYGSMET NHSCETTVTE 120 PENSLVVGQE EEDRDEAEAA SWLLPNLGKN NGNNHSQNFS IGDEYLDLVD YSSSMEKQFT 180 DQSNQYQQPC NVPERSYRGD GVVPLQVDES RGHMHHGQHN LELGITYAPR SSNGSISHMV 240 HVSSMDLIVV PESTTSDATV SQPRSPKAVT DQLTEPPPQM LSPVEREARV LRYREKKKMR 300 KFEKTIRYAS RKAYAEKRPR IKGRFAKRNE ADAEADQTFS TTITFDTGYG IVPSL* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 293 | 299 | REKKKMR |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative transcription factor that may be involved in the light input to the circadian clock but does not affect flowering time. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Carubv10001279m |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Expressed with a circadian rhythm showing a peak at dawn. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006288045.1 | 0.0 | zinc finger protein CONSTANS-LIKE 1 | ||||
Swissprot | O50055 | 0.0 | COL1_ARATH; Zinc finger protein CONSTANS-LIKE 1 | ||||
TrEMBL | R0HBC4 | 0.0 | R0HBC4_9BRAS; Uncharacterized protein | ||||
STRING | XP_006288045.1 | 0.0 | (Capsella rubella) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2128 | 26 | 70 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G15850.1 | 1e-179 | CONSTANS-like 1 |
Link Out ? help Back to Top | |
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Phytozome | Carubv10001279m |
Entrez Gene | 17883121 |
Publications ? help Back to Top | |||
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