PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Carubv10001212m
Common NameCARUB_v10001212mg
Organism
Capsella rubella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family NF-YC
Protein Properties Length: 371aa    MW: 42133.7 Da    PI: 5.751
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Carubv10001212mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC56.65.7e-18851651898
            NF-YC  18 nhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivpr 98 
                      ++++P arikki++adedv +i+  +Pvl+ska elf+ +l   ++  + +   +t+    ++++v+r ++fdfl ++v +
  Carubv10001212m  85 DTRFPAARIKKIMQADEDVGKIALAVPVLVSKALELFLQDLCDHTYEITLQRGAKTVSSLHLKNCVERYNVFDFLREVVSK 165
                      678*************************************************************************99976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.102.2E-2582151IPR009072Histone-fold
SuperFamilySSF471131.82E-1983178IPR009072Histone-fold
PfamPF008086.1E-1987150IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 371 aa     Download sequence    Send to blast
IWFLLLLFVC GHPPPNSLVF HFIQKINEYS LLYKELICPL ISNLKDFSLR VVSIYPETIS  60
SPLSLSSFQA FLCDPNKSLM RKKLDTRFPA ARIKKIMQAD EDVGKIALAV PVLVSKALEL  120
FLQDLCDHTY EITLQRGAKT VSSLHLKNCV ERYNVFDFLR EVVSKVPDYG HGHGHSQGHA  180
DVAMDDRNIS KRRKPQDDEI NDSDEDLKKT KVHEMGHAGP SGRGRGRGRG RGRGRSAKTA  240
ERELFHREME IEPTILVAPQ LTQEEIKMHA PPQQHGSEKK DVDERFNHTK QELESPDDTN  300
SGLGRGFDLN TQSLDIEIKP PVITASREEM KPEEYPCWSI PDMANIDPMQ VANMSKRLDE  360
DEEDYDEEES *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1jfi_A4e-2081151575Transcription Regulator NC2 alpha chain
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1224233RGRGRGRGRG
2224234RGRGRGRGRGR
Cis-element ? help Back to Top
SourceLink
PlantRegMapCarubv10001212m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006287977.20.0dr1-associated corepressor
TrEMBLR0H7M70.0R0H7M7_9BRAS; Uncharacterized protein (Fragment)
STRINGXP_006287977.10.0(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM35062458
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12480.18e-99nuclear factor Y, subunit C11