PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Carubv10001082m
Common NameCARUB_v10001082mg
Organism
Capsella rubella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family bHLH
Protein Properties Length: 412aa    MW: 46621.5 Da    PI: 5.4792
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Carubv10001082mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH40.45.2e-13236283254
                      HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
              HLH   2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                       ++h e+Er+RR+++N++f  Lr ++P+       +++Ka+ L  Av YI +L
  Carubv10001082m 236 EVSHVEAERQRREKLNHRFYALRAIVPNV-----SRMDKASLLADAVSYIEDL 283
                      579*************************6.....4***************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142154.7E-2731183IPR025610Transcription factor MYC/MYB N-terminal
SuperFamilySSF474597.2E-18234302IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088816.939234283IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000835.79E-13235284No hitNo description
PfamPF000101.2E-10237283IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.9E-17238303IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.1E-14240289IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 412 aa     Download sequence    Send to blast
MDNNLTSLSS SMLSITQQTP AIVSSSPTEL LQQKLRFIVE TSPDQWAYII FWQKMIDDQL  60
DRSYLVWVDG HFRGNKNYTS QENHTTKSIE CELMMDGGDL EMFYATSFYG EDGLWRKEIS  120
DESLVWLTGL DELRFSSYER AKEASFHGVH TFVSAPIHNC IIELGSSDSI NKNWNFINRV  180
KSILFGSGKT LELTNQTGSY SKPVESDHSE IGNQQFRSEN KRMKKLEKTD GATAKEVSHV  240
EAERQRREKL NHRFYALRAI VPNVSRMDKA SLLADAVSYI EDLKSRIDHL ETEMKSLKTT  300
MTETDKLDHN SSNTSPSSVD QVNQKPSEAN LEVQAKIVGD EAVVRVQTEN VNHPTCALMS  360
TLMEMDCRVQ RANASRLGQI MVQDVVVLVP DGLRSEDMLR TTLVRNLSSL C*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A6e-23237304774Transcription factor MYC2
5gnj_B6e-23237304774Transcription factor MYC2
5gnj_E6e-23237304774Transcription factor MYC2
5gnj_F6e-23237304774Transcription factor MYC2
5gnj_G6e-23237304774Transcription factor MYC2
5gnj_I6e-23237304774Transcription factor MYC2
5gnj_M6e-23237304774Transcription factor MYC2
5gnj_N6e-23237304774Transcription factor MYC2
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapCarubv10001082m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006287856.10.0transcription factor bHLH14
SwissprotO230900.0BH014_ARATH; Transcription factor bHLH14
TrEMBLR0GV070.0R0GV07_9BRAS; Uncharacterized protein
STRINGXP_006287856.10.0(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM30392163
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00870.10.0bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]