PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Carubv10001020m
Common NameCARUB_v10001020mg
Organism
Capsella rubella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family TALE
Protein Properties Length: 428aa    MW: 46959.2 Da    PI: 6.2653
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Carubv10001020mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox23.41e-073643972154
                      HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
         Homeobox  21 knrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                      k +yp++e++++L +++gL+ +q+ +WF N+R +
  Carubv10001020m 364 KWPYPTEEDKARLVQETGLQLKQINNWFINQRKR 397
                      469*****************************87 PP
2ELK28.82.8e-10318339122
              ELK   1 ELKhqLlrKYsgyLgsLkqEFs 22 
                      ELKh+L+++Y+++++++++E++
  Carubv10001020m 318 ELKHELKQGYKEKIVDIREEIL 339
                      9*******************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012551.6E-19153197IPR005540KNOX1
PfamPF037901.1E-17156196IPR005540KNOX1
SMARTSM012561.0E-28209264IPR005541KNOX2
PfamPF037911.0E-20214263IPR005541KNOX2
PROSITE profilePS512139.969318338IPR005539ELK domain
SMARTSM011886.1E-4318339IPR005539ELK domain
PfamPF037899.9E-7318339IPR005539ELK domain
PROSITE profilePS5007111.726338401IPR001356Homeobox domain
SuperFamilySSF466895.13E-16340404IPR009057Homeodomain-like
SMARTSM003892.4E-11340405IPR001356Homeobox domain
CDDcd000866.11E-12341402No hitNo description
Gene3DG3DSA:1.10.10.603.6E-25345402IPR009057Homeodomain-like
PfamPF059201.2E-17358397IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009416Biological Processresponse to light stimulus
GO:0009722Biological Processdetection of cytokinin stimulus
GO:0071345Biological Processcellular response to cytokine stimulus
GO:0005634Cellular Componentnucleus
GO:0005829Cellular Componentcytosol
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 428 aa     Download sequence    Send to blast
MAFHHNHLSQ DLSFNHFTDQ HQPPPPQPPP PPPSQHFQEA PPPNWLNSAL LRSSDNNNNF  60
LNLHTTTANT TTATSSDSPS SAAVAANQWL SRSSSFLQRN NATGSAVVGD GIDDVTGGAE  120
TLIGGDMKTG GGGDGKNDGG AAAVDGVVSW QNARHKAEIL SHPLYEQLLS AHVACLRIAT  180
PVDQLPRIDA QLAQSQHVVA KYSALGAAAQ GLVADDKELD QFMTHYVLLL CSFKEQLQQH  240
VRVHAMEAVM ACWEIEQSLQ SLTGVSPGEG MGATMSDDED EQVESDANMF DGSLDVLGFG  300
PLIPTESERS LMERVRQELK HELKQGYKEK IVDIREEILR KRRAGKLPGD TTSVLKAWWQ  360
SHSKWPYPTE EDKARLVQET GLQLKQINNW FINQRKRNWH SNPSSSTVLK NKRKSNAGDN  420
SGRDRFA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1x2n_A2e-12341405872Homeobox protein PKNOX1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapCarubv10001020m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY0860910.0AY086091.1 Arabidopsis thaliana clone 21240 mRNA, complete sequence.
GenBankX923920.0X92392.1 A.thaliana mRNA for KNAT3 homeobox protein.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006287805.10.0homeobox protein knotted-1-like 3 isoform X1
SwissprotP480000.0KNAT3_ARATH; Homeobox protein knotted-1-like 3
TrEMBLR0HAQ00.0R0HAQ0_9BRAS; Uncharacterized protein
STRINGXP_006287805.10.0(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM44428158
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25220.10.0KNOTTED1-like homeobox gene 3
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]