PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Carubv10000606m
Common NameCARUB_v10000606mg
Organism
Capsella rubella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family WRKY
Protein Properties Length: 559aa    MW: 60182.2 Da    PI: 7.0357
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Carubv10000606mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY94.66.9e-30235294159
                      ---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
             WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                      ++Dg++WrKYGqK  kg+++pr+YYrCt a gCpv+k+v+r+a+d +++++tYeg+H h+
  Carubv10000606m 235 MNDGCQWRKYGQKIAKGNPCPRAYYRCTVApGCPVRKQVQRCADDMSILITTYEGTHSHP 294
                      58***************************99****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.3E-31220296IPR003657WRKY domain
SuperFamilySSF1182901.7E-27228296IPR003657WRKY domain
PROSITE profilePS5081128.69230296IPR003657WRKY domain
SMARTSM007749.3E-37235295IPR003657WRKY domain
PfamPF031064.7E-27236294IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0006952Biological Processdefense response
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 559 aa     Download sequence    Send to blast
MEVLLKLPIS DSPLKDKVFG SVQIHEATKG DSDDHQELES AKAEMSEVKE ENEKLKGMLE  60
RIESDYKSLK LRFFDIIQQE PSNNPSQSQN MVDHRKPTTT DLSSFDQERE LVSLSLGRRS  120
SSPSNSISKK EEKDAKSAES NADKELTKAG LTLGINNGDG RESNMSLSIE NPANSSLENS  180
TEEAPGESWP PSKVTGKRSS PTPAPGGDVD GEAGQQNHVK RARVCVRARC DTPTMNDGCQ  240
WRKYGQKIAK GNPCPRAYYR CTVAPGCPVR KQVQRCADDM SILITTYEGT HSHPLPLSAT  300
TMASTTSAAA SMLLSGSSSS SAAEMVGNNL YDNSRFNNNN NNKSFYSPTL HSPLHPTVTL  360
DLTAPQHPSS SSLPSLNFNK FSNSFQRFPP TSLNFSSNAS SSSSNSSNLN LPAIWGNGYS  420
SYTPYPYNNV QFGTSSLGKT VQNSQSLTET LTKALTSDPS FHSVIAAAIS TMVGSNGEQQ  480
IAGPRNLNSN NIQQTTTTNN NKGCGGYFSS LLMSNIMASN QTGASSDQPS SQLPPFSMFK  540
NSSSSSSTTS FANKDEKS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A4e-21222296174WRKY transcription factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCarubv10000606m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006287400.10.0probable WRKY transcription factor 72
SwissprotQ9LXG80.0WRK72_ARATH; Probable WRKY transcription factor 72
TrEMBLR0H9M00.0R0H9M0_9BRAS; Uncharacterized protein
STRINGXP_006287400.10.0(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM29592868
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G15130.10.0WRKY DNA-binding protein 72