PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Carubv10000576m
Common NameCARUB_v10000576mg
Organism
Capsella rubella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family bHLH
Protein Properties Length: 574aa    MW: 65350.2 Da    PI: 6.179
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Carubv10000576mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH18.92.7e-063563931355
                      HHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
              HLH  13 RdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                      R++ N++f+ Lr+++P+ +       ++K +iL+ +++Y+++L+
  Carubv10000576m 356 RRKENEKFSVLRTMVPTvN------EVDKESILKNTIKYLQELE 393
                      6777*************65......8***************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142151.6E-4425215IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS5088812.309343392IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.3E-8349398IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.8E-9356403IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000838.45E-6356397No hitNo description
SuperFamilySSF474598.11E-9356407IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048629Biological Processtrichome patterning
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 574 aa     Download sequence    Send to blast
MSLTMADDGA EAAAGGRSKR QNSLLRKKLA LAVRSVQWNY AIFWSSSLTQ PGVLEWGEGC  60
YNGDMKKRKK SYESHYKYGL QRSKQLRKLY LSMLEGDNGT TVSTTHDEHN DDEEHNCDRT  120
SMMLSPDDLS DEEWYYLVSM SYVFSPSDQC LPGRASATGE TIWLCNAQYA ENKLFSRSLL  180
ARTVVCFPYL GGVIELGVTE LISEDYSLLQ HIKTCLLEIP VHHNKDDEKK MGIMTSEGHL  240
MLEEKHQIPL GISDEDLHYK RTISTVLNYS VDISSRNDKT IHHPQPNLVS SDSGSSFLPW  300
KKCEQPNSGF GENQSDLQPQ SQNVLRKMLY NVPLMHAKRM LPSERSALNQ DDPSDRRKEN  360
EKFSVLRTMV PTVNEVDKES ILKNTIKYLQ ELEARVEELE SCMGSVNFVE RQRKTTKNLN  420
DSVLIEETSG NYDDSTKIDE NSGETEQVTV FRDKTHLRVK LKETEVVIEV RCSYRDYIVA  480
DIMETLSNLH MDAFSVRSHT LNKFLTLNLK AKFRGAAVAS VGMIKRELRR VIDCFFEPIC  540
DVPLTLHQVF LVFVCKVGQG LVGFFDNVCL FIF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4rqw_A5e-11252169192Transcription factor MYC3
4rqw_B5e-11252169192Transcription factor MYC3
4rru_A6e-112521248227Transcription factor MYC3
4rs9_A5e-11252169192Transcription factor MYC3
4ywc_A6e-112521248227Transcription factor MYC3
4ywc_B6e-112521248227Transcription factor MYC3
4yz6_A5e-11252169192Transcription factor MYC3
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
16569KKRKK
Functional Description ? help Back to Top
Source Description
UniProtTrancsription activator, when associated with MYB75/PAP1 or MYB90/PAP2. {ECO:0000269|PubMed:15361138}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCarubv10000576m
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By cold, UV, flagellin, jasmonic acid (JA), and salicylic acid (SA) treatments. {ECO:0000269|PubMed:12679534}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB4936640.0AB493664.1 Arabidopsis thaliana At4g00480 mRNA for hypothetical protein, partial cds, clone: RAAt4g00480.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023636933.10.0transcription factor MYC1
SwissprotQ8W2F10.0BH012_ARATH; Transcription factor MYC1
TrEMBLR0FDM90.0R0FDM9_9BRAS; Uncharacterized protein
STRINGXP_006287374.10.0(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM117701832
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00480.20.0bHLH family protein