PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Carubv10000523m
Common NameCARUB_v10000523mg
Organism
Capsella rubella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family Trihelix
Protein Properties Length: 598aa    MW: 68773.7 Da    PI: 7.513
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Carubv10000523mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix49.51.1e-15100166275
         trihelix   2 WtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtses 75 
                      W+ +evlaL+++r+ +e+++ +       We+ s+k++e gf+rsp++Ckek+e+ ++ry + +++++    ++
  Carubv10000523m 100 WCSDEVLALLRFRSTVENWFPEF-----TWEHTSRKLAEVGFKRSPQECKEKFEEEERRYFNGNNNNNTS--DH 166
                      ********************998.....9*******************************9999888863..33 PP
2trihelix106.71.6e-33440530186
         trihelix   1 rWtkqevlaLiearremeerlrrgk......lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                      rW+k+evlaLi++rr++ +++++++      ++ plWe++skkm e g++rs+k+Ckekwen+nk+++k+k+ +kkr + +s+tcpyf+ql+
  Carubv10000523m 440 RWPKDEVLALINIRRNISNNMNDDEssspssKAVPLWERISKKMLELGYKRSAKRCKEKWENINKYFRKTKDVNKKR-PLDSRTCPYFHQLT 530
                      8**************999999986444455499*******************************************8.9***********98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500905.49492151IPR017877Myb-like domain
PfamPF138376.7E-1198164No hitNo description
Gene3DG3DSA:1.10.10.605.9E-4431504IPR009057Homeodomain-like
PfamPF138372.1E-20439531No hitNo description
CDDcd122036.32E-25439510No hitNo description
PROSITE profilePS500907.201440503IPR017877Myb-like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0001158Molecular Functionenhancer sequence-specific DNA binding
GO:0005516Molecular Functioncalmodulin binding
Sequence ? help Back to Top
Protein Sequence    Length: 598 aa     Download sequence    Send to blast
MFDGGVPEQI HRFITSPPPA SPLPPHQPAA ERSLPFPASF ASFNTYHHQA QHILSLDSRK  60
IIHHHHHHHH HDIKDSGVAT TAEWIGHTDH DGSDNHHHPW CSDEVLALLR FRSTVENWFP  120
EFTWEHTSRK LAEVGFKRSP QECKEKFEEE ERRYFNGNNN NNTSDHHQHI GNYNNKGNSY  180
RIFSEVEEFY DGHVSPEVGD NQNKRTNSLE RKGNVEETGQ DLMDEDKLRD QDQGQVEEAS  240
MGNKMNLIDV GKVVEDDVKS SSSSSLMMVM REKKKKKRKR KKEKERFGVL KGFCEGLVRN  300
MIAQQEEMHK KLLEDMAKKE EEKIAREEDW KKQEMERVNK ELEVRKQEQA MASDRNTNII  360
KFISKFTDHD LDQDLSSLAL PQTQGRRKKF QTSSSSLLHQ TLTPLTNDKS LQPIPTKTLK  420
TKTQNPKPPK SEDKSDLGKR WPKDEVLALI NIRRNISNNM NDDESSSPSS KAVPLWERIS  480
KKMLELGYKR SAKRCKEKWE NINKYFRKTK DVNKKRPLDS RTCPYFHQLT ALYSQPSTGT  540
TATTTATATS AGDLETRPEE TRVGSEDLDN IPTPMHVDAD GTGDKSNVQF SGFDLEF*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1270281REKKKKKRKRKK
2272281KKKKKRKRKK
3273278KKKKRK
4273281KKKKRKRKK
5275280KKRKRK
6275281KKRKRKK
7276284KRKRKKEKE
8277281RKRKK
9277282RKRKKE
10277283RKRKKEK
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that binds specific DNA sequence. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00011PBMTransfer from AT5G28300Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapCarubv10000523m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2272850.0AK227285.1 Arabidopsis thaliana mRNA for GTL1 - like protein, complete cds, clone: RAFL11-11-K16.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006287322.10.0trihelix transcription factor GTL2
SwissprotQ8H1810.0GTL2_ARATH; Trihelix transcription factor GTL2
TrEMBLR0H6180.0R0H618_9BRAS; Uncharacterized protein
STRINGXP_006287322.10.0(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM82682838
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G28300.10.0Trihelix family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]