PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Carubv10000489m

Common Name

CARUB_v10000489mg

Organism

Capsella rubella

Taxonomic ID

81985

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella

Family

NAC

Protein Properties

Length: 615aa MW: 68409.3 Da PI: 5.397

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Carubv10000489m	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	120.4	1.7e-37	68	195	3	128
NAM 3 pGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp..kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevls 94 G+rF+Pt eel+++yLk+k gk+ ++e+i e++i+++ P+ Lp + +++++ ewyfFs+ +++++k+ +r+t sgyWk+tgk++ + + Carubv10000489m 68 IGYRFSPTGEELINDYLKNKNLGKTWLVHEAIGEINILSYIPELLPdlAVIRSKDPEWYFFSPIVYTNSKKKEMKRITGSGYWKTTGKNRIIRD 161 69*********************999999**********96447788888********************************** PP NAM 95 kkgelvglkktLvfykgrapkgektdWvmheyrl 128 k+g ++glkktL++y+g+ p+g+ t Wvmhey++ Carubv10000489m 162 KSGVEIGLKKTLMYYEGKVPNGVWTPWVMHEYHI 195 ******************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	1.03E-41	62	213	IPR003441	NAC domain
PROSITE profile	PS51005	40.896	66	213	IPR003441	NAC domain
Pfam	PF02365	3.5E-21	69	195	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0016021	Cellular Component	integral component of membrane
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 615 aa Download sequence Send to blast
MLSSPATIIT SRKIFSKFCD EYYLPQTNKS YKYLSLRLCF SSPITSPSLY LKKKQSSRKT 60 KNMVKDLIGY RFSPTGEELI NDYLKNKNLG KTWLVHEAIG EINILSYIPE LLPDLAVIRS 120 KDPEWYFFSP IVYTNSKKKE MKRITGSGYW KTTGKNRIIR DKSGVEIGLK KTLMYYEGKV 180 PNGVWTPWVM HEYHITSLPH LQINYVICQV KYKGEAKDIS YGNNLTESSH SLDFDSNTAI 240 AMYTPEPADS YVICNVCGRG GKEVVNISNG DSSSEPSLPS LVSDSNTIRL TCIIPPVMGG 300 SDPNSINNSP YVQLQAPFSL QENDELLSGL PQNLTHTSYG NNMTEPSHSL VFDSNTAMAS 360 NRAPEPAVSL VSDMFRYSLL STYVFTCCLL FFQIQVEQAG GNNFVGMSLD DLIDPNEDLS 420 EWDEYYDPDT FFSDDINNTN TSLQPQAPHL SPSDNEFIDG LMNVCQRQVK DLFTLSMTEN 480 RNNHAATKPL SGTIPDYSSD SDSDAESISA TSYPSTSSPV DSDGSSNRCL SSCSSTDSCK 540 DPSTGRETRA VLSKQEVKQG TPKAIDVPIM KTEKKGWFIT EEAMERNHKM KIIGFILLLA 600 LIGMITSALL NVKA*

Sequence ? help Back to Top

Protein Sequence Length: 615 aa Download sequence Send to blast

MLSSPATIIT SRKIFSKFCD EYYLPQTNKS YKYLSLRLCF SSPITSPSLY LKKKQSSRKT  60
KNMVKDLIGY RFSPTGEELI NDYLKNKNLG KTWLVHEAIG EINILSYIPE LLPDLAVIRS  120
KDPEWYFFSP IVYTNSKKKE MKRITGSGYW KTTGKNRIIR DKSGVEIGLK KTLMYYEGKV  180
PNGVWTPWVM HEYHITSLPH LQINYVICQV KYKGEAKDIS YGNNLTESSH SLDFDSNTAI  240
AMYTPEPADS YVICNVCGRG GKEVVNISNG DSSSEPSLPS LVSDSNTIRL TCIIPPVMGG  300
SDPNSINNSP YVQLQAPFSL QENDELLSGL PQNLTHTSYG NNMTEPSHSL VFDSNTAMAS  360
NRAPEPAVSL VSDMFRYSLL STYVFTCCLL FFQIQVEQAG GNNFVGMSLD DLIDPNEDLS  420
EWDEYYDPDT FFSDDINNTN TSLQPQAPHL SPSDNEFIDG LMNVCQRQVK DLFTLSMTEN  480
RNNHAATKPL SGTIPDYSSD SDSDAESISA TSYPSTSSPV DSDGSSNRCL SSCSSTDSCK  540
DPSTGRETRA VLSKQEVKQG TPKAIDVPIM KTEKKGWFIT EEAMERNHKM KIIGFILLLA  600
LIGMITSALL NVKA*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	1e-23	69	195	20	142	NO APICAL MERISTEM PROTEIN
1ut4_B	1e-23	69	195	20	142	NO APICAL MERISTEM PROTEIN
1ut7_A	1e-23	69	195	20	142	NO APICAL MERISTEM PROTEIN
1ut7_B	1e-23	69	195	20	142	NO APICAL MERISTEM PROTEIN
3swm_A	2e-23	69	195	23	145	NAC domain-containing protein 19
3swm_B	2e-23	69	195	23	145	NAC domain-containing protein 19
3swm_C	2e-23	69	195	23	145	NAC domain-containing protein 19
3swm_D	2e-23	69	195	23	145	NAC domain-containing protein 19
3swp_A	2e-23	69	195	23	145	NAC domain-containing protein 19
3swp_B	2e-23	69	195	23	145	NAC domain-containing protein 19
3swp_C	2e-23	69	195	23	145	NAC domain-containing protein 19
3swp_D	2e-23	69	195	23	145	NAC domain-containing protein 19
4dul_A	1e-23	69	195	20	142	NAC domain-containing protein 19
4dul_B	1e-23	69	195	20	142	NAC domain-containing protein 19
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Carubv10000489m

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_023637095.1	0.0	NAC domain-containing protein 69 isoform X2
TrEMBL	R0GTH7	0.0	R0GTH7_9BRAS; Uncharacterized protein
STRING	XP_006287296.1	0.0	(Capsella rubella)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM33530	2	2

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G01550.1	2e-78	NAC domain containing protein 69

Link Out ? help Back to Top
Phytozome	Carubv10000489m
Entrez Gene	17882526