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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
Cagra.9562s0001.1.p |
| Organism |
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| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
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| Family |
BBR-BPC |
| Protein Properties |
Length: 344aa MW: 38404.4 Da PI: 9.6391 |
| Description |
BBR-BPC family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Cagra.9562s0001.1.p | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
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| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | GAGA_bind | 407.3 | 1.9e-124 | 1 | 343 | 1 | 301 |
GAGA_bind 1 mdddgsre..rnkgyye....pa.aslkenlglqlmssiaerdakirernlalsekkaavaerdmaflqrdkalaernkalverdnklla 83
mdd g+re r+k+ ++ +s+ +q+ms+iaerda+i+ernla+sekkaa+aerdmaflqrd+a+aern+a++erd++l+a
Cagra.9562s0001.1.p 1 MDDGGHREngRHKAAQGqwmmQHqPSM-----KQVMSIIAERDAAIQERNLAISEKKAAIAERDMAFLQRDTAIAERNNAIMERDSALTA 85
999999887888873331222222344.....5********************************************************* PP
GAGA_bind 84 lllvensla.......salpvgvqvlsgtksidslqqlse.......pqledsavelreeeklealpieeaaeeakekkkkkkrqrakkp 159
l+++ens++ sa+p+g+q+++g+k++++ +++++ pql+++a+e+re+e ++ lp++ +a +a e++k+k+++rak+p
Cagra.9562s0001.1.p 86 LQYRENSMVtaasanmSACPPGCQISRGVKNMHHPHMHHHhhqqhhiPQLTENAYETREMEPNDGLPTSPTAGSALESAKPKRGKRAKDP 175
*******9999999999*****************999666689999******************************************** PP
GAGA_bind 160 kekkakkkkkksekskkkvkkesader........................skaekksidl.vlngvslDestlPvPvCsCtGalrqCYk 224
k++++++++k+++k+++kvkkes+d+ sk+++ks+++ +ln+v +De+t+P+PvCsCtG+lrqCYk
Cagra.9562s0001.1.p 176 KTTTQTAANKRGTKNQRKVKKESEDDLtklmfvktthdyteedsskhiligSKSDWKSQEMvGLNQVVYDETTMPPPVCSCTGVLRQCYK 265
***********************984358********************************88*************************** PP
GAGA_bind 225 WGnGGWqSaCCtttiSvyPLPvstkrrgaRiagrKmSqgafkklLekLaaeG.ydlsnpvDLkdhWAkHGtnkfvtir 301
WGnGGWqS+CCttt+S+yPLP+ +++r+aR++grKmS++af+klL++LaaeG +dlsnpvDLkdhWAkHGtn+++ti+
Cagra.9562s0001.1.p 266 WGNGGWQSSCCTTTLSMYPLPALPNKRHARVGGRKMSGSAFNKLLSRLAAEGhHDLSNPVDLKDHWAKHGTNRYITIK 343
****************************************************88***********************8 PP
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| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0009723 | Biological Process | response to ethylene |
| GO:0005730 | Cellular Component | nucleolus |
| GO:0003677 | Molecular Function | DNA binding |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| GO:0042803 | Molecular Function | protein homodimerization activity |
| Sequence ? help Back to Top |
| Protein Sequence Length: 344 aa
Download sequence Send
to blast |
MDDGGHRENG RHKAAQGQWM MQHQPSMKQV MSIIAERDAA IQERNLAISE KKAAIAERDM 60
AFLQRDTAIA ERNNAIMERD SALTALQYRE NSMVTAASAN MSACPPGCQI SRGVKNMHHP 120
HMHHHHHQQH HIPQLTENAY ETREMEPNDG LPTSPTAGSA LESAKPKRGK RAKDPKTTTQ 180
TAANKRGTKN QRKVKKESED DLTKLMFVKT THDYTEEDSS KHILIGSKSD WKSQEMVGLN 240
QVVYDETTMP PPVCSCTGVL RQCYKWGNGG WQSSCCTTTL SMYPLPALPN KRHARVGGRK 300
MSGSAFNKLL SRLAAEGHHD LSNPVDLKDH WAKHGTNRYI TIK*
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| Functional Description ? help
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| Source |
Description |
| UniProt | Transcriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. {ECO:0000269|PubMed:14731261}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | AY088564 | 0.0 | AY088564.1 Arabidopsis thaliana clone 7878 mRNA, complete sequence. |
| GenBank | AY380572 | 0.0 | AY380572.1 Arabidopsis thaliana basic pentacysteine 6 (BPC6) mRNA, complete cds. |
