PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cagra.9501s0015.1.p
Organism
Capsella grandiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family GRAS
Protein Properties Length: 637aa    MW: 70907.6 Da    PI: 7.0844
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cagra.9501s0015.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS419.33.2e-1282566321374
                 GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdg.dpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsP 89 
                          lv+l++ c ea++s++ +++++++ar  +l+sp+g +pm+Rl+ay+ eALa r+a+    ++++ pp+e +++ ++e+ +al+++++v+P
  Cagra.9501s0015.1.p 256 LVNLITGCLEAIRSRNIAAINHFIARTGDLSSPRGrTPMTRLIAYYIEALALRVAH----IFHIAPPREFDRTVEDESGNALRFLNQVTP 341
                          578999*****************************99******************9....***********999**************** PP

                 GRAS  90 ilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefn 179
                          i+kf h+taN+++l+a+eg+ervHiiDfdi+qGlQWp+++q+LasR+++p+++RiTg+g+    sk el+etg+rL+ fAe+++++fef+
  Cagra.9501s0015.1.p 342 IPKFIHFTANEMLLRAFEGKERVHIIDFDIKQGLQWPSFFQSLASRTNPPHHVRITGIGE----SKLELNETGDRLHGFAEAMNLQFEFH 427
                          ************************************************************....************************** PP

                 GRAS 180 vlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfd 269
                          + v++rled++l++L+vk+gE++aVn+v+q+h++l + +  +   +++L l++s++P  +v++eqea+hnse++ +r++++l+yysa+fd
  Cagra.9501s0015.1.p 428 P-VVDRLEDVRLWMLHVKEGESVAVNCVMQMHKTLYDGTGAAI--RDFLGLIRSTNPVALVLAEQEAEHNSEQLETRVCNSLKYYSAMFD 514
                          *.7********************************88777777..99******************************************* PP

                 GRAS 270 sleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk..sdg.yrveee.. 354
                          +++++l+++s  r+k+E++l+grei+n+vaceg++r+erh  +++Wr++le+ GF+++ +se+++ q k+llr+++  ++g ++ve +  
  Cagra.9501s0015.1.p 515 AIHTNLATDSLIRVKIEEMLFGREIRNIVACEGSHRQERHVGFRHWRRMLEQLGFRSLGVSEREVLQSKMLLRMYGsgNEGfFNVERRde 604
                          ***************************************************************************985666899996566 PP

                 GRAS 355 ........sgslvlgWkdrpLvsvSaWr 374
                                   g ++l W+++pL+++SaW+
  Cagra.9501s0015.1.p 605 dggaeggrGGGVTLRWSEQPLYTISAWT 632
                          7888888677888**************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098557.315230599IPR005202Transcription factor GRAS
PfamPF035141.1E-125256632IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 637 aa     Download sequence    Send to blast
MLAGCSSSSL LSPTRRLRSE AAVAATSATV SAHFPMNTQR LDLPCSSSFT RKETPSNRPL  60
GRSISLDNSN NNNSSKPIER KTSGCSLKQN IKLPPLATTR GNGEGFSWNN DSNINNNRGK  120
KSLKRLAEED ESCLSRAKKT KCENEGDDDD EEKLCFVPSE VISQPLPNWV DSVITELAGI  180
GDKDVESSRP AAVKEASGSS TSASSESHSL SHRVPEPTNG SRNPYSHRGA AEERTSGTIN  240
INNNNHRNDL QRDFELVNLI TGCLEAIRSR NIAAINHFIA RTGDLSSPRG RTPMTRLIAY  300
YIEALALRVA HIFHIAPPRE FDRTVEDESG NALRFLNQVT PIPKFIHFTA NEMLLRAFEG  360
KERVHIIDFD IKQGLQWPSF FQSLASRTNP PHHVRITGIG ESKLELNETG DRLHGFAEAM  420
NLQFEFHPVV DRLEDVRLWM LHVKEGESVA VNCVMQMHKT LYDGTGAAIR DFLGLIRSTN  480
PVALVLAEQE AEHNSEQLET RVCNSLKYYS AMFDAIHTNL ATDSLIRVKI EEMLFGREIR  540
NIVACEGSHR QERHVGFRHW RRMLEQLGFR SLGVSEREVL QSKMLLRMYG SGNEGFFNVE  600
RRDEDGGAEG GRGGGVTLRW SEQPLYTISA WTIGGG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_A8e-6326363225378Protein SCARECROW
5b3h_D8e-6326363225378Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCagra.9501s0015.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0107950.0AC010795.5 Arabidopsis thaliana chromosome 1 BAC F16M19 genomic sequence, complete sequence.
GenBankCP0026840.0CP002684.1 Arabidopsis thaliana chromosome 1 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006300849.10.0scarecrow-like protein 28
SwissprotQ9CAN30.0SCL28_ARATH; Scarecrow-like protein 28
TrEMBLR0GD750.0R0GD75_9BRAS; Uncharacterized protein
STRINGCagra.9501s0015.1.p0.0(Capsella grandiflora)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM72962743
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G63100.10.0GRAS family protein