 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
Cagra.9128s0007.1.p |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
|
| Family |
LBD |
| Protein Properties |
Length: 236aa MW: 25745.2 Da PI: 4.764 |
| Description |
LBD family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Cagra.9128s0007.1.p | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | DUF260 | 135.9 | 1.5e-42 | 58 | 157 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleql 90
+CaaCk+lrr+Ca++Cvlapyfp ++p kf ++h++FGasn++k+l++lpe++r+da++s+vyeA ar+rdPvyG++g i +lq+q+++l
Cagra.9128s0007.1.p 58 PCAACKILRRRCAEKCVLAPYFPPTDPMKFTIAHRVFGASNIIKFLQELPESQRTDAVNSMVYEAGARMRDPVYGCAGAIYHLQRQVSEL 147
7***************************************************************************************** PP
DUF260 91 kaelallkee 100
+a+la+++ e
Cagra.9128s0007.1.p 148 QAQLAKTQVE 157
*****99865 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 236 aa
Download sequence Send
to blast |
MLKMEINGGV ATPTASAVAV AVAVAETTTP VSSPSPTSSP PPPPSPQQPP QPPVVLSPCA 60
ACKILRRRCA EKCVLAPYFP PTDPMKFTIA HRVFGASNII KFLQELPESQ RTDAVNSMVY 120
EAGARMRDPV YGCAGAIYHL QRQVSELQAQ LAKTQVELVG MQLQRSSLLE LVYKMEQTKL 180
SAQEQGQHKM SFESSFESGD EFISSPDEES NDLGFLEDNN NNNNSSMSWW DPLWT*
|
| Annotation --
Nucleotide ? help
Back to Top |
| Source |
Hit ID |
E-value |
Description |
| GenBank | AB473840 | 0.0 | AB473840.1 Arabidopsis thaliana ASL7 mRNA for ASYMMETRIC LEAVES2-like 7 protein, complete cds. |
