PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cagra.8966s0001.1.p
Organism
Capsella grandiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family MYB_related
Protein Properties Length: 174aa    MW: 19405.4 Da    PI: 4.6865
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cagra.8966s0001.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding45.32e-142270146
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHH CS
      Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqk 46
                         +g+WT eEd++l+++++ +G g W++ a+       gRt++++k++w++
  Cagra.8966s0001.1.p 22 KGPWTMEEDLILINYIANHGEGVWNSLAKSAAkhlPGRTDNEIKNFWRT 70
                         79********************99999877666666***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.603.9E-201779IPR009057Homeodomain-like
PROSITE profilePS5129416.4251776IPR017930Myb domain
SuperFamilySSF466892.23E-131880IPR009057Homeodomain-like
SMARTSM007178.0E-102174IPR001005SANT/Myb domain
PfamPF002497.4E-132270IPR001005SANT/Myb domain
CDDcd001679.48E-122470No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 174 aa     Download sequence    Send to blast
MEKREGSGTG GSGSSGDADV RKGPWTMEED LILINYIANH GEGVWNSLAK SAAKHLPGRT  60
DNEIKNFWRT KIQKYIIKNG ETTTTAGLQS SEIMNHHVTS TSKVLNDTLE EPMDLYSPTT  120
SYQYANNIDH LQLSYGTYVP ESDSIMMPLS IDQAEQNYWS VDDLWPMHLY NGN*
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor acting redundantly with MYB21 and MYB57 to control stamen filament elongation in the late developed flowers. Contributes with MYB21 to induction of MYB108 by jasmonate. Repressed at the transcript levels by DELLA proteins. {ECO:0000269|PubMed:16805732, ECO:0000269|PubMed:16972096, ECO:0000269|PubMed:19091873, ECO:0000269|PubMed:19325888, ECO:0000269|PubMed:21447791}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCagra.8966s0001.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated by jasmonate. {ECO:0000269|PubMed:16805732}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006285780.11e-105transcription factor MYB24
SwissprotQ9SPG91e-80MYB24_ARATH; Transcription factor MYB24
TrEMBLR0H5581e-104R0H558_9BRAS; Uncharacterized protein
STRINGCagra.8966s0001.1.p1e-126(Capsella grandiflora)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM4282646
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G40350.19e-83myb domain protein 24
Publications ? help Back to Top
  1. Liu Z, et al.
    A Conserved Cytochrome P450 Evolved in Seed Plants Regulates Flower Maturation.
    Mol Plant, 2015. 8(12): p. 1751-65
    [PMID:26388305]
  2. Chen X,Huang H,Qi T,Liu B,Song S
    New perspective of the bHLH-MYB complex in jasmonate-regulated plant fertility in arabidopsis.
    Plant Signal Behav, 2016. 11(2): p. e1135280
    [PMID:26829586]
  3. Huang H, et al.
    Arabidopsis MYB24 Regulates Jasmonate-Mediated Stamen Development.
    Front Plant Sci, 2017. 8: p. 1525
    [PMID:28928760]