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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
Cagra.8367s0003.1.p |
| Organism |
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| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
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| Family |
NAC |
| Protein Properties |
Length: 379aa MW: 43270.4 Da PI: 7.0455 |
| Description |
NAC family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Cagra.8367s0003.1.p | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
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| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | NAM | 165.2 | 2.3e-51 | 5 | 132 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdk 90
l pGfrFhPtdeelv++yLk+kve+++l++ + i+++diyk++PwdLpk + ++kewyf+++rd+ky++++r+nr+t +g+Wkatg+d+
Cagra.8367s0003.1.p 5 LLPGFRFHPTDEELVSFYLKRKVEDRPLSI-KLITQLDIYKYDPWDLPKFAMMGDKEWYFYCPRDRKYRNSTRPNRVTGAGFWKATGTDR 93
579***************************.89***************7666799*********************************** PP
NAM 91 evlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128
+++s+ +++ +gl+k+Lv+y+g+a kg ktdW+mhe+rl
Cagra.8367s0003.1.p 94 PIYSSdGSKFIGLRKSLVYYSGKAAKGIKTDWMMHEFRL 132
****956667***************************98 PP
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| Sequence ? help Back to Top |
| Protein Sequence Length: 379 aa
Download sequence Send
to blast |
MEDVLLPGFR FHPTDEELVS FYLKRKVEDR PLSIKLITQL DIYKYDPWDL PKFAMMGDKE 60
WYFYCPRDRK YRNSTRPNRV TGAGFWKATG TDRPIYSSDG SKFIGLRKSL VYYSGKAAKG 120
IKTDWMMHEF RLPSTSSHTL GDTHHVSSND SWAICRILKK INTTAFRAIS HSFVSSLPQD 180
ESTHIKPYEK PSNTSQISSD KILQNSSCFK FYNEDMNVTQ PSSCFDHKEA TKTSTCTTTS 240
PFSYLDFSSS DSPGSRLDQQ HLRNLLLFPQ ETQPPQFPKF ITNYMISSTD SSFLEEYTNH 300
IGDLTSSVLA QEQCPALVSL PQEHHHETRF EENILSNTNP DHHALHHLPS SNVGDQKHHS 360
MLLDNYYSSL SASFSITG*
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| 3D Structure ? help Back to Top |
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| PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
| 1ut4_A | 1e-54 | 5 | 160 | 17 | 165 | NO APICAL MERISTEM PROTEIN |
| 1ut4_B | 1e-54 | 5 | 160 | 17 | 165 | NO APICAL MERISTEM PROTEIN |
| 1ut7_A | 1e-54 | 5 | 160 | 17 | 165 | NO APICAL MERISTEM PROTEIN |
| 1ut7_B | 1e-54 | 5 | 160 | 17 | 165 | NO APICAL MERISTEM PROTEIN |
| 3swm_A | 1e-54 | 5 | 160 | 20 | 168 | NAC domain-containing protein 19 |
| 3swm_B | 1e-54 | 5 | 160 | 20 | 168 | NAC domain-containing protein 19 |
| 3swm_C | 1e-54 | 5 | 160 | 20 | 168 | NAC domain-containing protein 19 |
| 3swm_D | 1e-54 | 5 | 160 | 20 | 168 | NAC domain-containing protein 19 |
| 3swp_A | 1e-54 | 5 | 160 | 20 | 168 | NAC domain-containing protein 19 |
| 3swp_B | 1e-54 | 5 | 160 | 20 | 168 | NAC domain-containing protein 19 |
| 3swp_C | 1e-54 | 5 | 160 | 20 | 168 | NAC domain-containing protein 19 |
| 3swp_D | 1e-54 | 5 | 160 | 20 | 168 | NAC domain-containing protein 19 |
| 4dul_A | 1e-54 | 5 | 160 | 17 | 165 | NAC domain-containing protein 19 |
| 4dul_B | 1e-54 | 5 | 160 | 17 | 165 | NAC domain-containing protein 19 |
| Search in ModeBase |
| Functional Description ? help
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| Source |
Description |
| UniProt | Promotes periclinal root capforming cell divisions. Activates expression of its negative regulator SMB in a feedback loop for controlled switches in cell division plane. {ECO:0000269|PubMed:19081078}. |
| Regulation -- Description ? help
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| Source |
Description |
| UniProt | INDUCTION: Repressed by SMB in oriented-divised root cap stem cells. {ECO:0000269|PubMed:19081078}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | AC189353 | 4e-89 | AC189353.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB043L15, complete sequence. |
