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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cagra.8123s0001.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
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Family | bHLH | ||||||||
Protein Properties | Length: 258aa MW: 28126.4 Da PI: 8.2252 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 28.1 | 3.6e-09 | 181 | 222 | 9 | 55 |
HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 ++RR++i +++ L+el+P+ +K++ +++LekA+ Y+k Lq Cagra.8123s0001.1.p 181 VKNRREKISERLKVLQELVPNG-----TKVDLVTMLEKAIGYVKFLQ 222 59******************97.....8******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.280.10 | 3.8E-11 | 171 | 226 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 14.5 | 172 | 221 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 4.71E-12 | 175 | 229 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 1.9E-8 | 178 | 227 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 2.9E-6 | 181 | 222 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 9.51E-11 | 182 | 226 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 258 aa Download sequence Send to blast |
MSLINDHDNE PLYISKLKSS EDLSSPEVCG LNGGASASSS SISHQQHQGF FFDHHQSFVL 60 PANSDSAFSV LDRNMSYSYT GWSEQIDSIS PRVIIKSSDC FATMSSFELT SNPASKPATN 120 HSDGDWLYSD STIVKTGSIL ESLSPKPAGN KRPSTGENTQ GSKKAKTKTT NSPKDPQSQA 180 VKNRREKISE RLKVLQELVP NGTKVDLVTM LEKAIGYVKF LQLQVKFWPI QGRKAPGISQ 240 VKEAIDAILS QQDTNSN* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Cagra.8123s0001.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AF488615 | 2e-49 | AF488615.1 Arabidopsis thaliana clone bHLH083 putative bHLH transcription factor mRNA, partial sequence. | |||
GenBank | AY128310 | 2e-49 | AY128310.1 Arabidopsis thaliana unknown protein (At1g66470) mRNA, complete cds. | |||
GenBank | BT006320 | 2e-49 | BT006320.1 Arabidopsis thaliana At1g66470 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_023635590.1 | 1e-153 | LOW QUALITY PROTEIN: putative transcription factor bHLH086 | ||||
Swissprot | Q9FJ00 | 1e-107 | BH086_ARATH; Putative transcription factor bHLH086 | ||||
TrEMBL | R0F3A1 | 1e-137 | R0F3A1_9BRAS; Uncharacterized protein (Fragment) | ||||
STRING | Cagra.8123s0001.1.p | 0.0 | (Capsella grandiflora) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4260 | 28 | 54 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G37800.1 | 2e-99 | RHD SIX-LIKE 1 |
Link Out ? help Back to Top | |
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Phytozome | Cagra.8123s0001.1.p |
Publications ? help Back to Top | |||
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