PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella

Family

NAC

Protein Properties

Length: 259aa MW: 29922.4 Da PI: 4.8805

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cagra.7865s0013.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	161.5	3.2e-50	6	140	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgk 88 lppGfrFhPtdeelv +yL+++ eg ++el e+i+ +d+yk++Pw+Lp k + +++ ew+fF++rd+ky++g+r nratksgyWkatgk Cagra.7865s0013.1.p 6 LPPGFRFHPTDEELVGYYLHRRNEGLEIEL-EIIPFMDLYKFDPWELPeKsFLPNRDMEWFFFCPRDRKYQNGSRINRATKSGYWKATGK 94 79**************************.99**********95334556888**************************** PP NAM 89 dkevlsk......kgelvglkktLvfykgrapkgektdWvmheyrl 128 d++++++ +++ +g++ktLvf+ grap g +tdWvmheyrl Cagra.7865s0013.1.p 95 DRKIICHttssslSSSIIGCRKTLVFHLGRAPFGGRTDWVMHEYRL 140 *986666666666*************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	5.49E-58	4	164	IPR003441	NAC domain
PROSITE profile	PS51005	55.768	6	164	IPR003441	NAC domain
Pfam	PF02365	2.8E-28	7	140	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 259 aa Download sequence Send to blast
MVGSYLPPGF RFHPTDEELV GYYLHRRNEG LEIELEIIPF MDLYKFDPWE LPEKSFLPNR 60 DMEWFFFCPR DRKYQNGSRI NRATKSGYWK ATGKDRKIIC HTTSSSLSSS IIGCRKTLVF 120 HLGRAPFGGR TDWVMHEYRL CDNDTSKGSL DFKGDFALCR VIKRNEHTVK KCETNSPEVS 180 DEPLSNNVES SCQASDLEKG SCDSSNTRWS SPDLILESSF QEHSQSQTEE DVGFQIFALP 240 EFEYPPEFFA DLNFDWEI*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	8e-51	6	170	17	171	NO APICAL MERISTEM PROTEIN
1ut4_B	8e-51	6	170	17	171	NO APICAL MERISTEM PROTEIN
1ut7_A	8e-51	6	170	17	171	NO APICAL MERISTEM PROTEIN
1ut7_B	8e-51	6	170	17	171	NO APICAL MERISTEM PROTEIN
3swm_A	6e-51	6	170	20	174	NAC domain-containing protein 19
3swm_B	6e-51	6	170	20	174	NAC domain-containing protein 19
3swm_C	6e-51	6	170	20	174	NAC domain-containing protein 19
3swm_D	6e-51	6	170	20	174	NAC domain-containing protein 19
3swp_A	6e-51	6	170	20	174	NAC domain-containing protein 19
3swp_B	6e-51	6	170	20	174	NAC domain-containing protein 19
3swp_C	6e-51	6	170	20	174	NAC domain-containing protein 19
3swp_D	6e-51	6	170	20	174	NAC domain-containing protein 19
4dul_A	8e-51	6	170	17	171	NAC domain-containing protein 19
4dul_B	8e-51	6	170	17	171	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor involved in tissue reunion of wounded inflorescence stems. Required for the division of pith cells in the reunion process, which is dependent on polar-transported auxin and the wound-inducible hormones ethylene and jasmonate (PubMed:21911380). Binds to the promoters of XTH19 and XTH20 to induce their expression via auxin signaling. XTH19 and XTH20 are involved in cell proliferation in the tissue reunion process of incised stems (PubMed:25182467). Involved in hypocotyl graft union formation. Required for the auxin- mediated promotion of vascular tissue proliferation during hypocotyl graft attachment (PubMed:27986917). {ECO:0000269\|PubMed:21911380, ECO:0000269\|PubMed:25182467, ECO:0000269\|PubMed:27986917}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00175	DAP	Transfer from AT1G32510	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Cagra.7865s0013.1.p

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by wounding in the flowering stem. {ECO:0000269\|PubMed:21911380}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	CP002684	2e-96	CP002684.1 Arabidopsis thaliana chromosome 1 sequence.
GenBank	F5D14	2e-96	AC007767.3 Sequence of BAC F5D14 from Arabidopsis thaliana chromosome 1, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_023644894.1	1e-163	NAC domain-containing protein 71
Swissprot	O49697	6e-88	NAC71_ARATH; NAC domain-containing protein 71
TrEMBL	A0A178WL27	1e-160	A0A178WL27_ARATH; NAC011
TrEMBL	Q9LQK5	1e-160	Q9LQK5_ARATH; F5D14.30 protein
STRING	Cagra.7865s0013.1.p	0.0	(Capsella grandiflora)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM15029	17	19

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G32510.1	1e-164	NAC domain containing protein 11

Link Out ? help Back to Top
Phytozome	Cagra.7865s0013.1.p

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Asahina M,Satoh S Molecular and physiological mechanisms regulating tissue reunion in incised plant tissues. J. Plant Res., 2015. 128(3): p. 381-8 [PMID:25736731] Matsuoka K, et al. Differential Cellular Control by Cotyledon-Derived Phytohormones Involved in Graft Reunion of Arabidopsis Hypocotyls. Plant Cell Physiol., 2016. 57(12): p. 2620-2631 [PMID:27986917]