PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cagra.6594s0010.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family HD-ZIP
Protein Properties Length: 796aa    MW: 86720.9 Da    PI: 6.0301
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cagra.6594s0010.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox65.66.8e-21132187156
                          TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
             Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                          +++ +++t++q++eLe++F+++++p++++r eL+k+l L++rqVk+WFqNrR+++k
  Cagra.6594s0010.1.p 132 KKRYHRHTPQQIQELESMFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMK 187
                          688999***********************************************999 PP

2START216.11.2e-673175361206
                          HHHHHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS...SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEE CS
                START   1 elaeeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv..dsgealrasgvvdmvlallveellddkeqWdetla....kae 80 
                          ela++a++elvk+a++eep+Wvks     +++n+de++++f+++k     +ea+r+sg+v+ ++  lve+l+d++ +W e+++    +a+
  Cagra.6594s0010.1.p 317 ELALTAMDELVKLAQSEEPLWVKSLdgerDELNQDEYMRTFSTTKPtgLATEASRISGMVIINSLALVETLMDSN-RWMEMFPcnvaRAT 405
                          5899**************************************999999***************************.************** PP

                          EEEEECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEE CS
                START  81 tlevissg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghsk 163
                          t++vis g      galqlm+aelq+lsplvp R++ f+R+++q+ +g+w++vdvS+d+ ++++  s+v+R  +lpSg++++++sng+sk
  Cagra.6594s0010.1.p 406 TTDVISGGmagtinGALQLMNAELQVLSPLVPvRNVNFLRFCKQHAEGVWAVVDVSIDPVRENSGGSPVIR--RLPSGCVVQDMSNGYSK 493
                          ****************************************************************9******..***************** PP

                          EEEEE-EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
                START 164 vtwvehvdlkgrlphwllrslvksglaegaktwvatlqrqcek 206
                          vtwveh++++++++h+l+r+l++sgl +g ++w+atlqrqce+
  Cagra.6594s0010.1.p 494 VTWVEHAEYDENQIHQLYRPLLRSGLGFGSQRWLATLQRQCEC 536
                          *****************************************96 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.67E-20119189IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.606.8E-22120189IPR009057Homeodomain-like
PROSITE profilePS5007117.297129189IPR001356Homeobox domain
SMARTSM003899.5E-18130193IPR001356Homeobox domain
CDDcd000861.35E-18131189No hitNo description
PfamPF000462.0E-18132187IPR001356Homeobox domain
PROSITE patternPS000270164187IPR017970Homeobox, conserved site
PROSITE profilePS5084842.515308539IPR002913START domain
SuperFamilySSF559617.23E-31312536No hitNo description
CDDcd088757.37E-115312535No hitNo description
PfamPF018521.1E-60317536IPR002913START domain
SMARTSM002345.3E-42317536IPR002913START domain
SuperFamilySSF559617.61E-21555779No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009827Biological Processplant-type cell wall modification
GO:0042335Biological Processcuticle development
GO:0043481Biological Processanthocyanin accumulation in tissues in response to UV light
GO:0048765Biological Processroot hair cell differentiation
GO:0008289Molecular Functionlipid binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 796 aa     Download sequence    Send to blast
MNFGSLFDNT PGGGSTGARL LSGLSYGNHT AATNVLPGGA LAQAASLFSP PLTNKSVYAS  60
SGLSLALEQP ERGTNRGEAS MMRNNNVGGG DNFDGSVNRR SREEEHESRS GSDNVEGISG  120
EDQDAADKPP RKKRYHRHTP QQIQELESMF KECPHPDEKQ RLELSKRLCL ETRQVKFWFQ  180
NRRTQMKTQL ERHENALLRQ ENDKLRAENM SIREAMRNPT CTSCGGPAML GDISLEEHHL  240
RIENARLKDE LDRVCNLTGK FLGHHHHHHY NSSLELAVGN NNGGNFAFPP DFGGGACLPP  300
PQQSGINGID QKSVLLELAL TAMDELVKLA QSEEPLWVKS LDGERDELNQ DEYMRTFSTT  360
KPTGLATEAS RISGMVIINS LALVETLMDS NRWMEMFPCN VARATTTDVI SGGMAGTING  420
ALQLMNAELQ VLSPLVPVRN VNFLRFCKQH AEGVWAVVDV SIDPVRENSG GSPVIRRLPS  480
GCVVQDMSNG YSKVTWVEHA EYDENQIHQL YRPLLRSGLG FGSQRWLATL QRQCECLAVL  540
MSSNVTSNDN TSITPGGRKS MLKLAQRMTF NFCSGISAPS VHSWSKLTVG NVDPDVRVMT  600
RKSVDDPGEP PGIVLSAATS VWLPASPQRL FDFLRNERMR CEWDILSNGG PMQEMAHIAK  660
GQDQGVSLLR SNAMNANQSC MLILQETCID SSGALVVYAP VDIPAMNVVM NGGDSSYVAL  720
LPSGFAVLPD GGMDGGSCGD GEQRPVGGGS LLTVAFQILV NNLPTAKLTV ESVETVNNLI  780
SCTVQKIRAA LQCES*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in the regulation of the tissue-specific accumulation of anthocyanins and in cellular organization of the primary root. {ECO:0000269|PubMed:10402424}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00421DAPTransfer from AT4G00730Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapCagra.6594s0010.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2269680.0AK226968.1 Arabidopsis thaliana mRNA for homeodomain protein AHDP, complete cds, clone: RAFL09-36-B10.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006287095.10.0homeobox-leucine zipper protein ANTHOCYANINLESS 2 isoform X1
SwissprotQ0WV120.0ANL2_ARATH; Homeobox-leucine zipper protein ANTHOCYANINLESS 2
TrEMBLR0H8W00.0R0H8W0_9BRAS; Uncharacterized protein
STRINGCagra.6594s0010.1.p0.0(Capsella grandiflora)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM112827105
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00730.10.0HD-ZIP family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]