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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cagra.6594s0010.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 796aa MW: 86720.9 Da PI: 6.0301 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 65.6 | 6.8e-21 | 132 | 187 | 1 | 56 |
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 +++ +++t++q++eLe++F+++++p++++r eL+k+l L++rqVk+WFqNrR+++k Cagra.6594s0010.1.p 132 KKRYHRHTPQQIQELESMFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMK 187 688999***********************************************999 PP | |||||||
2 | START | 216.1 | 1.2e-67 | 317 | 536 | 1 | 206 |
HHHHHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS...SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEE CS START 1 elaeeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv..dsgealrasgvvdmvlallveellddkeqWdetla....kae 80 ela++a++elvk+a++eep+Wvks +++n+de++++f+++k +ea+r+sg+v+ ++ lve+l+d++ +W e+++ +a+ Cagra.6594s0010.1.p 317 ELALTAMDELVKLAQSEEPLWVKSLdgerDELNQDEYMRTFSTTKPtgLATEASRISGMVIINSLALVETLMDSN-RWMEMFPcnvaRAT 405 5899**************************************999999***************************.************** PP EEEEECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEE CS START 81 tlevissg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghsk 163 t++vis g galqlm+aelq+lsplvp R++ f+R+++q+ +g+w++vdvS+d+ ++++ s+v+R +lpSg++++++sng+sk Cagra.6594s0010.1.p 406 TTDVISGGmagtinGALQLMNAELQVLSPLVPvRNVNFLRFCKQHAEGVWAVVDVSIDPVRENSGGSPVIR--RLPSGCVVQDMSNGYSK 493 ****************************************************************9******..***************** PP EEEEE-EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS START 164 vtwvehvdlkgrlphwllrslvksglaegaktwvatlqrqcek 206 vtwveh++++++++h+l+r+l++sgl +g ++w+atlqrqce+ Cagra.6594s0010.1.p 494 VTWVEHAEYDENQIHQLYRPLLRSGLGFGSQRWLATLQRQCEC 536 *****************************************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 1.67E-20 | 119 | 189 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 6.8E-22 | 120 | 189 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 17.297 | 129 | 189 | IPR001356 | Homeobox domain |
SMART | SM00389 | 9.5E-18 | 130 | 193 | IPR001356 | Homeobox domain |
CDD | cd00086 | 1.35E-18 | 131 | 189 | No hit | No description |
Pfam | PF00046 | 2.0E-18 | 132 | 187 | IPR001356 | Homeobox domain |
PROSITE pattern | PS00027 | 0 | 164 | 187 | IPR017970 | Homeobox, conserved site |
PROSITE profile | PS50848 | 42.515 | 308 | 539 | IPR002913 | START domain |
SuperFamily | SSF55961 | 7.23E-31 | 312 | 536 | No hit | No description |
CDD | cd08875 | 7.37E-115 | 312 | 535 | No hit | No description |
Pfam | PF01852 | 1.1E-60 | 317 | 536 | IPR002913 | START domain |
SMART | SM00234 | 5.3E-42 | 317 | 536 | IPR002913 | START domain |
SuperFamily | SSF55961 | 7.61E-21 | 555 | 779 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009827 | Biological Process | plant-type cell wall modification | ||||
GO:0042335 | Biological Process | cuticle development | ||||
GO:0043481 | Biological Process | anthocyanin accumulation in tissues in response to UV light | ||||
GO:0048765 | Biological Process | root hair cell differentiation | ||||
GO:0008289 | Molecular Function | lipid binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 796 aa Download sequence Send to blast |
MNFGSLFDNT PGGGSTGARL LSGLSYGNHT AATNVLPGGA LAQAASLFSP PLTNKSVYAS 60 SGLSLALEQP ERGTNRGEAS MMRNNNVGGG DNFDGSVNRR SREEEHESRS GSDNVEGISG 120 EDQDAADKPP RKKRYHRHTP QQIQELESMF KECPHPDEKQ RLELSKRLCL ETRQVKFWFQ 180 NRRTQMKTQL ERHENALLRQ ENDKLRAENM SIREAMRNPT CTSCGGPAML GDISLEEHHL 240 RIENARLKDE LDRVCNLTGK FLGHHHHHHY NSSLELAVGN NNGGNFAFPP DFGGGACLPP 300 PQQSGINGID QKSVLLELAL TAMDELVKLA QSEEPLWVKS LDGERDELNQ DEYMRTFSTT 360 KPTGLATEAS RISGMVIINS LALVETLMDS NRWMEMFPCN VARATTTDVI SGGMAGTING 420 ALQLMNAELQ VLSPLVPVRN VNFLRFCKQH AEGVWAVVDV SIDPVRENSG GSPVIRRLPS 480 GCVVQDMSNG YSKVTWVEHA EYDENQIHQL YRPLLRSGLG FGSQRWLATL QRQCECLAVL 540 MSSNVTSNDN TSITPGGRKS MLKLAQRMTF NFCSGISAPS VHSWSKLTVG NVDPDVRVMT 600 RKSVDDPGEP PGIVLSAATS VWLPASPQRL FDFLRNERMR CEWDILSNGG PMQEMAHIAK 660 GQDQGVSLLR SNAMNANQSC MLILQETCID SSGALVVYAP VDIPAMNVVM NGGDSSYVAL 720 LPSGFAVLPD GGMDGGSCGD GEQRPVGGGS LLTVAFQILV NNLPTAKLTV ESVETVNNLI 780 SCTVQKIRAA LQCES* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in the regulation of the tissue-specific accumulation of anthocyanins and in cellular organization of the primary root. {ECO:0000269|PubMed:10402424}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00421 | DAP | Transfer from AT4G00730 | Download |
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Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Cagra.6594s0010.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK226968 | 0.0 | AK226968.1 Arabidopsis thaliana mRNA for homeodomain protein AHDP, complete cds, clone: RAFL09-36-B10. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006287095.1 | 0.0 | homeobox-leucine zipper protein ANTHOCYANINLESS 2 isoform X1 | ||||
Swissprot | Q0WV12 | 0.0 | ANL2_ARATH; Homeobox-leucine zipper protein ANTHOCYANINLESS 2 | ||||
TrEMBL | R0H8W0 | 0.0 | R0H8W0_9BRAS; Uncharacterized protein | ||||
STRING | Cagra.6594s0010.1.p | 0.0 | (Capsella grandiflora) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1128 | 27 | 105 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G00730.1 | 0.0 | HD-ZIP family protein |
Link Out ? help Back to Top | |
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Phytozome | Cagra.6594s0010.1.p |
Publications ? help Back to Top | |||
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