PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cagra.6571s0007.1.p
Organism
Capsella grandiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family HD-ZIP
Protein Properties Length: 713aa    MW: 80475.6 Da    PI: 7.6897
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cagra.6571s0007.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox50.82.8e-163282656
                         S--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
             Homeobox  6 tftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
                          ++++q+  Le++F +  +p+ ++r +LA++l+++ +q+k+WFqN+R + k
  Cagra.6571s0007.1.p 32 HHSHHQTVSLEQYFTEREHPNSAQRHQLAEELNMKPEQIKFWFQNKRVQTK 82
                         5799*******************************************9887 PP
2START120.13e-382364563206
                          HHHHHHHHHHHHHHC-TT-EEEE.......EXCCTTEEEEEEESSS....SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....E CS
                START   3 aeeaaqelvkkalaeepgWvkss.......esengdevlqkfeeskv...dsgealrasgvvdmvlallveellddkeqWdetla....k 78 
                          ae a +e+++++  +ep+Wvks+       +  n+     k ++ k+   ++ e +++++vv+m++++lv  l+d+  +W + ++    +
  Cagra.6571s0007.1.p 236 AENAVAEVMSLIRMDEPMWVKSPidgrlvlDPVNYGSIFGKMSQFKTtsvCPRESSKEVVVVPMDATNLVDMLFDTE-KWARLFPtivnE 324
                          788999*****************999999977777777777755555777***************************.999999999999 PP

                          EEEEEEECTT.....EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEE CS
                START  79 aetlevissg.....galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghs 162
                          a+t+ v+++      ++  +++ +l +lsplvp R+f+++R+++++++  w+i+dvS  +++    +s+v  ++++pSg li+ ++ g s
  Cagra.6571s0007.1.p 325 AKTVHVLETInrrrpTFSRVIYENLHMLSPLVPpREFLILRTCQKMEDNLWLIADVSCHHPNVAY-DSPV--CTKRPSGVLIQGLAHGCS 411
                          9999998887788**9*******************************************999987.4444..689*************** PP

                          EEEEEE-EE--SSXX.HHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
                START 163 kvtwvehvdlkgrlp.hwllrslvksglaegaktwvatlqrqcek 206
                          kvtw+ehv+++ +l  h l+r l++s+   ga++w+ tl+r ce+
  Cagra.6571s0007.1.p 412 KVTWIEHVEVSNNLQpHRLYRDLLNSCFGYGARRWTVTLERMCER 456
                          ***********99855***************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.603.0E-151284IPR009057Homeodomain-like
SuperFamilySSF466898.36E-151583IPR009057Homeodomain-like
PROSITE profilePS5007114.9492484IPR001356Homeobox domain
SMARTSM003896.7E-102688IPR001356Homeobox domain
PfamPF000461.1E-133282IPR001356Homeobox domain
CDDcd000862.30E-104182No hitNo description
PROSITE patternPS0002705982IPR017970Homeobox, conserved site
PROSITE profilePS5084841.903225459IPR002913START domain
SuperFamilySSF559614.12E-30228457No hitNo description
CDDcd088753.20E-79229455No hitNo description
SMARTSM002346.0E-22234456IPR002913START domain
PfamPF018523.6E-32236456IPR002913START domain
Gene3DG3DSA:3.30.530.203.5E-10292423IPR023393START-like domain
SuperFamilySSF559611.65E-7480697No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0008289Molecular Functionlipid binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 713 aa     Download sequence    Send to blast
MYSNSCEDSS TNERETSSGD TNANQEGSNH QHHSHHQTVS LEQYFTEREH PNSAQRHQLA  60
EELNMKPEQI KFWFQNKRVQ TKMHNEKAQN AELRIDNLTL QCENEAMEQA MKTVVCPPCG  120
GRNPGREEQL CHLENLRSEN TFLQREHERL SSYVTQHRGS RLSIHGPSTY GTTSRTRPTP  180
YGSSSNHRPK QSSLLRGPYA RENINITPVP KPRKLVQLQH FQPMSRQEKA EMIETAENAV  240
AEVMSLIRMD EPMWVKSPID GRLVLDPVNY GSIFGKMSQF KTTSVCPRES SKEVVVVPMD  300
ATNLVDMLFD TEKWARLFPT IVNEAKTVHV LETINRRRPT FSRVIYENLH MLSPLVPPRE  360
FLILRTCQKM EDNLWLIADV SCHHPNVAYD SPVCTKRPSG VLIQGLAHGC SKVTWIEHVE  420
VSNNLQPHRL YRDLLNSCFG YGARRWTVTL ERMCERLSLY SMHEVPAADY VGVVRTIHGR  480
RSIMNLGERM LKNFAWIMKM ATKLDFSRPS DADNSKIRIS VRTNTQAGQP VGLIVCASSS  540
LSLSVPPVQV YNLLKNLEVR NQWDVLCHGN PVIEATRFVT GLKKKNNVTF LQTSSEGDNT  600
EMMILQDSFI DELGGMVVYA PMDLKTAYAA ISGDVDPSTI PILPSGFIIS RDSRSFPGEQ  660
DGRCMTLLTL AFQILVSGSI SSTELNLGDA TTTVETLINC TVQRVKAMLN CG*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCagra.6571s0007.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006303739.10.0homeobox-leucine zipper protein HDG10
SwissprotQ9S9Z00.0HDG10_ARATH; Homeobox-leucine zipper protein HDG10
TrEMBLR0GL000.0R0GL00_9BRAS; Uncharacterized protein
STRINGCagra.6571s0007.1.p0.0(Capsella grandiflora)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM84681531
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G34650.10.0homeodomain GLABROUS 10
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Lung SC, et al.
    Arabidopsis ACYL-COA-BINDING PROTEIN1 interacts with STEROL C4-METHYL OXIDASE1-2 to modulate gene expression of homeodomain-leucine zipper IV transcription factors.
    New Phytol., 2018. 218(1): p. 183-200
    [PMID:29288621]