 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
Cagra.6372s0006.1.p |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
|
| Family |
NAC |
| Protein Properties |
Length: 324aa MW: 36407.2 Da PI: 7.0705 |
| Description |
NAC family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Cagra.6372s0006.1.p | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | NAM | 162.6 | 1.5e-50 | 19 | 146 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkklelee.vikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkd 89
lppGfrFhP+d+elv++yL ++++++ ++ v+ +vd++k+ePwd+pk++ + k+wyf+s+rd+kyatg r+nrat++gyWkatgkd
Cagra.6372s0006.1.p 19 LPPGFRFHPKDDELVCDYLMRRASSSLHHKPPlVLIQVDLNKCEPWDIPKMACVGGKDWYFYSQRDRKYATGLRTNRATATGYWKATGKD 108
79********************998875553416999************8777799********************************** PP
NAM 90 kevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
+++l+ kg+lvg++ktLvfy+grap+g+ktdWvmhe+rl
Cagra.6372s0006.1.p 109 RAILR-KGKLVGMRKTLVFYQGRAPRGRKTDWVMHEFRL 146
****9.999****************************98 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 324 aa
Download sequence Send
to blast |
METEEEMKES SISMVEAKLP PGFRFHPKDD ELVCDYLMRR ASSSLHHKPP LVLIQVDLNK 60
CEPWDIPKMA CVGGKDWYFY SQRDRKYATG LRTNRATATG YWKATGKDRA ILRKGKLVGM 120
RKTLVFYQGR APRGRKTDWV MHEFRLHGSY HPLDHSLTSP KEDWVLCRVF HKNTEGLICR 180
DNTGSCFDET ASASLPPLMD PYINFDQEPS SYLSDDQHFI INEHVPCFSN LSQNHTLNLT 240
SSVSELKTPC KNPNPLFTSA SSPATLTGLD SFSSSDQMVL RALLSQLTKI DGSLGDKESQ 300
NYGEGSSESL LTDIGIPSTA WKC*
|
| Functional Description ? help
Back to Top |
| Source |
Description |
| UniProt | Transcriptional activator that mediates auxin signaling to promote lateral root development. Activates the expression of two downstream auxin-responsive genes, DBP and AIR3. {ECO:0000269|PubMed:11114891}. |
| Regulation -- Description ? help
Back to Top |
| Source |
Description |
| UniProt | INDUCTION: Induced by auxin. |
| Annotation --
Nucleotide ? help
Back to Top |
| Source |
Hit ID |
E-value |
Description |
| GenBank | AF198054 | 0.0 | AF198054.1 Arabidopsis thaliana NAC1 (NAC1) mRNA, complete cds. |
| GenBank | AY085996 | 0.0 | AY085996.1 Arabidopsis thaliana clone 205648 mRNA, complete sequence. |
| Publications
? help Back to Top |
- Le Hénanff G, et al.
Grapevine NAC1 transcription factor as a convergent node in developmental processes, abiotic stresses, and necrotrophic/biotrophic pathogen tolerance.
J. Exp. Bot., 2013. 64(16): p. 4877-93
[PMID:24043850] - Ding Y, et al.
Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
BMC Plant Biol., 2013. 13: p. 229
[PMID:24377444] - Xiao D, et al.
SENESCENCE-SUPPRESSED PROTEIN PHOSPHATASE Directly Interacts with the Cytoplasmic Domain of SENESCENCE-ASSOCIATED RECEPTOR-LIKE KINASE and Negatively Regulates Leaf Senescence in Arabidopsis.
Plant Physiol., 2015. 169(2): p. 1275-91
[PMID:26304848] - Huo X,Wang C,Teng Y,Liu X
Identification of miRNAs associated with dark-induced senescence in Arabidopsis.
BMC Plant Biol., 2015. 15: p. 266
[PMID:26530097] - Chen X, et al.
Auxin-Independent NAC Pathway Acts in Response to Explant-Specific Wounding and Promotes Root Tip Emergence during de Novo Root Organogenesis in Arabidopsis.
Plant Physiol., 2016. 170(4): p. 2136-45
[PMID:26850273] - Liu C,Wang B,Li Z,Peng Z,Zhang J
TsNAC1 Is a Key Transcription Factor in Abiotic Stress Resistance and Growth.
Plant Physiol., 2018. 176(1): p. 742-756
[PMID:29122985]
|
