PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cagra.6170s0019.1.p
Organism
Capsella grandiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family GRAS
Protein Properties Length: 534aa    MW: 58314.7 Da    PI: 4.4917
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cagra.6170s0019.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS4293.6e-1311675261374
                 GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPi 90 
                          lv++L++cAeav++++l+la+al++r+  la++++ +m ++a+yf+eALa+r++r        ++ps+++ + s eel  +  f++ sP+
  Cagra.6170s0019.1.p 167 LVQALVACAEAVHQENLSLADALVKRVGSLAASQAGAMGKVATYFAEALARRIYR--------IHPSSAAIDPSFEEL-LQMNFYDSSPY 247
                          689****************************************************........445555433344443.4446******* PP

                 GRAS  91 lkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnv 180
                          lkf+h+taNqaIleav  ++ vH+iD++++qG+QWpaL+qaLa R++gpps+R+Tgvg p+  ++e ++e+g++La++A+++gv+fefn+
  Cagra.6170s0019.1.p 248 LKFAHFTANQAILEAVTMARSVHVIDLGLNQGMQWPALMQALALRAGGPPSFRLTGVGGPS--NREGIQELGWKLAQLAQAIGVEFEFNA 335
                          ***********************************************************87..9************************** PP

                 GRAS 181 lvakrledleleeLrvkp.gEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfd 269
                          l+++rl+dle+++++++p  E+l+Vn++++lh +l++++s+e+    +L +vk ++P +v+vveqea+hn++ Fl+rf eal+yys+lfd
  Cagra.6170s0019.1.p 336 LTTERLSDLEPDMFETRPeSETLVVNSIFELHPVLAQPGSIEK----LLATVKAVQPSIVTVVEQEANHNGAVFLDRFNEALHYYSSLFD 421
                          ******************9************************....******************************************* PP

                 GRAS 270 sleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgsl 358
                          sle ++   s++r+ +++++lgr+i nvva+eg++r+erhetl++Wr+r+++aGF +v+l+++a +qa+lll+  + +dgy+vee++gsl
  Cagra.6170s0019.1.p 422 SLEDSVVIPSQDRV-MSEVYLGRQILNVVAAEGTDRIERHETLAQWRKRMGSAGFVKVNLGSDAFNQASLLLAISGgGDGYKVEENDGSL 510
                          *****988888776.56677********************************************************************** PP

                 GRAS 359 vlgWkdrpLvsvSaWr 374
                          +l W+++pL+++SaW+
  Cagra.6170s0019.1.p 511 MLAWQTKPLIAASAWK 526
                          ***************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM011297.1E-3439115No hitNo description
PfamPF120411.7E-3139109IPR021914Transcriptional factor DELLA, N-terminal
PROSITE profilePS5098564.033141505IPR005202Transcription factor GRAS
PfamPF035141.2E-128167526IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009739Biological Processresponse to gibberellin
Sequence ? help Back to Top
Protein Sequence    Length: 534 aa     Download sequence    Send to blast
MKRTHQETSV KEEALSMSDY GKNLEGTIGC GGGGDDNIDE LLSVLGYKVR SSDMADVAQK  60
LEQLEMVLTN DSDDVVGSSY NFLNDTVHYN PSDLSGWAQT MLSELNYYPD LDPTTRICDL  120
RPITDDDDCC SSYSNSSKRV RLGPWCDSVS SESTRSVVLI EETGVRLVQA LVACAEAVHQ  180
ENLSLADALV KRVGSLAASQ AGAMGKVATY FAEALARRIY RIHPSSAAID PSFEELLQMN  240
FYDSSPYLKF AHFTANQAIL EAVTMARSVH VIDLGLNQGM QWPALMQALA LRAGGPPSFR  300
LTGVGGPSNR EGIQELGWKL AQLAQAIGVE FEFNALTTER LSDLEPDMFE TRPESETLVV  360
NSIFELHPVL AQPGSIEKLL ATVKAVQPSI VTVVEQEANH NGAVFLDRFN EALHYYSSLF  420
DSLEDSVVIP SQDRVMSEVY LGRQILNVVA AEGTDRIERH ETLAQWRKRM GSAGFVKVNL  480
GSDAFNQASL LLAISGGGDG YKVEENDGSL MLAWQTKPLI AASAWKLAVE LRR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A6e-6416152513378Protein SCARECROW
5b3h_A5e-6416152512377Protein SCARECROW
5b3h_D5e-6416152512377Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional regulator that acts as a repressor of the gibberellin (GA) signaling pathway. No effect of the BOI proteins on its stability. Probably acts by participating in large multiprotein complexes that repress transcription of GA-inducible genes. Its activity may be regulated by phytohormones such as auxin and ethylene (By similarity). {ECO:0000250, ECO:0000269|PubMed:12610625, ECO:0000269|PubMed:14615596}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCagra.6170s0019.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006289966.10.0DELLA protein RGL3
SwissprotQ9LF530.0RGL3_ARATH; DELLA protein RGL3
TrEMBLR0H0W30.0R0H0W3_9BRAS; Uncharacterized protein
STRINGCagra.6170s0019.1.p0.0(Capsella grandiflora)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM83728121
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G17490.10.0RGA-like protein 3
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Wild M,Achard P
    The DELLA protein RGL3 positively contributes to jasmonate/ethylene defense responses.
    Plant Signal Behav, 2013. 8(4): p. e23891
    [PMID:23425858]
  3. Shi H,Wei Y,Wang Q,Reiter RJ,He C
    Melatonin mediates the stabilization of DELLA proteins to repress the floral transition in Arabidopsis.
    J. Pineal Res., 2016. 60(3): p. 373-9
    [PMID:26887824]
  4. Shi H,Liu W,Wei Y,Ye T
    Integration of auxin/indole-3-acetic acid 17 and RGA-LIKE3 confers salt stress resistance through stabilization by nitric oxide in Arabidopsis.
    J. Exp. Bot., 2017. 68(5): p. 1239-1249
    [PMID:28158805]
  5. Huang KC,Lin WC,Cheng WH
    Salt hypersensitive mutant 9, a nucleolar APUM23 protein, is essential for salt sensitivity in association with the ABA signaling pathway in Arabidopsis.
    BMC Plant Biol., 2018. 18(1): p. 40
    [PMID:29490615]