PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella

Family

NAC

Protein Properties

Length: 314aa MW: 36155.5 Da PI: 7.8475

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cagra.6133s0030.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	172.6	1.2e-53	8	136	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..kvka.eekewyfFskrdkkyatgkrknratksgyWkatg 87 +ppGfrFhPtdeel+++yLkkk++ +k+++ evikevd++k+ePwdL+ ++ + ++ewyfFs++d+ky+tg+r+nrat+sg+Wkatg Cagra.6133s0030.1.p 8 VPPGFRFHPTDEELLHYYLKKKISYEKFDM-EVIKEVDLNKIEPWDLQDrcRIGStPQNEWYFFSHKDRKYPTGSRTNRATHSGFWKATG 96 69**************************.99**********952433332556*************************** PP NAM 88 kdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 +dk + + +++g++ktLvfykgrap+g+ktdW+mheyr+ Cagra.6133s0030.1.p 97 RDKCIRN-CYKKIGMRKTLVFYKGRAPHGQKTDWIMHEYRI 136 **9.999**************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	4.84E-59	7	156	IPR003441	NAC domain
PROSITE profile	PS51005	57.766	8	156	IPR003441	NAC domain
Pfam	PF02365	3.5E-28	9	136	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009834	Biological Process	plant-type secondary cell wall biogenesis
GO:0045893	Biological Process	positive regulation of transcription, DNA-templated
GO:0048829	Biological Process	root cap development
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 314 aa Download sequence Send to blast
MSSSNGGVPP GFRFHPTDEE LLHYYLKKKI SYEKFDMEVI KEVDLNKIEP WDLQDRCRIG 60 STPQNEWYFF SHKDRKYPTG SRTNRATHSG FWKATGRDKC IRNCYKKIGM RKTLVFYKGR 120 APHGQKTDWI MHEYRIEDTD DDPSEDGWVV CRVFKKKNLF KVGNENVVGS SINNNRIESR 180 SFIRRESSYQ GVSMFELNKP EEIGVHQYTQ PPMFQPHHQK PLSVGYDYSL ALLPRESEYH 240 QQACEPPSGV EVGTCKTVGE WGMVNCHIGN HDQDSSRAMR FEDEGNNNNS STVQPPPSNL 300 LSLRGENGFL GLF*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3ulx_A	4e-50	8	158	15	170	Stress-induced transcription factor NAC1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator. Together with SMB and BRN2, regulates cellular maturation of root cap. Promotes the expression of genes involved in secondary cell walls (SCW) biosynthesis. {ECO:0000269\|PubMed:20197506}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Cagra.6133s0030.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006303519.1	0.0	protein BEARSKIN1
Swissprot	Q9C878	0.0	BRN1_ARATH; Protein BEARSKIN1
TrEMBL	R0GKG7	0.0	R0GKG7_9BRAS; Uncharacterized protein
STRING	Cagra.6133s0030.1.p	0.0	(Capsella grandiflora)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM5213	26	48

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G33280.1	0.0	NAC domain containing protein 15

Link Out ? help Back to Top
Phytozome	Cagra.6133s0030.1.p

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Kamiya M, et al. Control of root cap maturation and cell detachment by BEARSKIN transcription factors in Arabidopsis. Development, 2016. 143(21): p. 4063-4072 [PMID:27803060]