PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cagra.6034s0007.1.p
Organism
Capsella grandiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family C2H2
Protein Properties Length: 94aa    MW: 10903 Da    PI: 9.1453
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cagra.6034s0007.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.51.2e-053557123
                         EEETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                         y+Cp+C+  F ++  +  H+++H
  Cagra.6034s0007.1.p 35 YTCPKCTGKFDTSQKFAAHMSSH 57
                         9********************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576679.68E-52359No hitNo description
Gene3DG3DSA:3.30.160.604.3E-43359IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS501578.8913562IPR007087Zinc finger, C2H2
PROSITE patternPS0002803757IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 94 aa     Download sequence    Send to blast
MLFEKSTDER SCEEIKKSDD DGRTHSLPYE KYGPYTCPKC TGKFDTSQKF AAHMSSHYKT  60
ETNNERAERF RARNKKKYGK RNLEDHGESQ KST*
Cis-element ? help Back to Top
SourceLink
PlantRegMapCagra.6034s0007.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB4935526e-54AB493552.1 Arabidopsis thaliana At2g18490 gene for hypothetical protein, partial cds, clone: RAAt2g18490.
GenBankAC0061356e-54AC006135.3 Arabidopsis thaliana chromosome 2 clone F24H14 map CIC06E08, complete sequence.
GenBankCP0026856e-54CP002685.1 Arabidopsis thaliana chromosome 2, complete sequence.
GenBankDQ4465196e-54DQ446519.1 Arabidopsis thaliana clone pENTR221-At2g18490 zinc finger family protein (At2g18490) gene, complete cds.
GenBankDQ6529986e-54DQ652998.1 Arabidopsis thaliana clone 0000008581_0000006689 unknown gene.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010467668.21e-49PREDICTED: uncharacterized protein LOC104747690
TrEMBLR0I5391e-60R0I539_9BRAS; Uncharacterized protein (Fragment)
STRINGCagra.6034s0007.1.p4e-63(Capsella grandiflora)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM19241958
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G18490.12e-30C2H2-like zinc finger protein