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Plant Transcription
Factor Database
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Transcription Factor Information
|
Basic
Information? help
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| TF ID |
Cagra.5961s0001.1.p |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
|
| Family |
Trihelix |
| Protein Properties |
Length: 311aa MW: 35277.3 Da PI: 9.7098 |
| Description |
Trihelix family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Cagra.5961s0001.1.p | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | trihelix | 70.2 | 3.8e-22 | 65 | 145 | 2 | 86 |
trihelix 2 WtkqevlaLiearremeerlrrgklkkplWeevskkm.rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86
Wt++e+ +Lie ++e++ +++rg lk ++Wee++ ++ + g+ rs++qC++k+e+++kr++ ++++++ s +p+++q+e
Cagra.5961s0001.1.p 65 WTHDETFLLIESYKEKWYAIGRGPLKTNHWEEIAVAVsGRSGVDRSSTQCRHKIEKMRKRFRSERQSMGPI-----SIWPFYNQME 145
***********************************998899****************************84.....68*******8 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 311 aa
Download sequence Send
to blast |
MATPSPTSSP PSDSNPNSAA TPPHQTQQPS PPHTNPSSTP PPHITVVALA ASTSSHARKT 60
QPILWTHDET FLLIESYKEK WYAIGRGPLK TNHWEEIAVA VSGRSGVDRS STQCRHKIEK 120
MRKRFRSERQ SMGPISIWPF YNQMEELDSN PAPISARPLT RLPPNSSNHY QEDQEDQEEE 180
DHYEEEDEDD ERQSKSRSIN YILRRPGSVN RFAGVGGGLL SWGQRDRSSK RKRNKNDGDG 240
GERRRKGVRA VAAEIRAFAE RVMVMEKKKM EFAKETVKLR KEMEIRRIDL IQSSQAQLLQ 300
FLNNAFDSSF *
|
| Nucleic Localization
Signal ? help
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 |
| No. |
Start |
End |
Sequence |
| 1 | 230 | 245 | RKRNKNDGDGGERRRK |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | AB028609 | 0.0 | AB028609.2 Arabidopsis thaliana genomic DNA, chromosome 3, TAC clone:K7P8. |
| GenBank | AK118157 | 0.0 | AK118157.1 Arabidopsis thaliana At3g24860 mRNA for unknown protein, complete cds, clone: RAFL19-47-G19. |
| GenBank | BT005491 | 0.0 | BT005491.1 Arabidopsis thaliana clone U50805 unknown protein (At3g24860) mRNA, complete cds. |
| GenBank | CP002686 | 0.0 | CP002686.1 Arabidopsis thaliana chromosome 3, complete sequence. |
