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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
Cagra.5905s0007.1.p |
| Organism |
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| Taxonomic ID |
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| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
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| Family |
bHLH |
| Protein Properties |
Length: 95aa MW: 10780.1 Da PI: 8.5137 |
| Description |
bHLH family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Cagra.5905s0007.1.p | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
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| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | HLH | 21.7 | 3.7e-07 | 25 | 61 | 19 | 54 |
HHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
HLH 19 afeeLrellPk.askapskKlsKaeiLekAveYIksL 54
+Lr++lP+ + +s K+s + +L+++++YI++L
Cagra.5905s0007.1.p 25 LVTKLRQILPEiGQRRRSDKVSASKVLQETCNYIRNL 61
5579*******999*********************98 PP
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| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0009640 | Biological Process | photomorphogenesis |
| GO:0009741 | Biological Process | response to brassinosteroid |
| GO:0009826 | Biological Process | unidimensional cell growth |
| GO:0048510 | Biological Process | regulation of timing of transition from vegetative to reproductive phase |
| GO:0046983 | Molecular Function | protein dimerization activity |
| Functional Description ? help
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| Source |
Description |
| UniProt | Atypical and probable non DNA-binding bHLH transcription factor that integrates multiple signaling pathways to regulate cell elongation and plant development. Binds IBH1, forming a pair of antagonistic bHLH transcription factors that function downstream of BZR1 to mediate brassinosteroid regulation of cell elongation. Regulates light responses by binding and inhibiting the activity of the bHLH transcription factor HFR1, a critical regulator of light signaling and shade avoidance. May have a regulatory role in various aspects of gibberellin-dependent growth and development. {ECO:0000269|PubMed:16527868, ECO:0000269|PubMed:20009022, ECO:0000269|PubMed:20305124, ECO:0000269|PubMed:23161888, ECO:0000269|PubMed:23221598}. |
| Regulation -- Description ? help
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| Source |
Description |
| UniProt | INDUCTION: By gibberellin and epibrassinolide. {ECO:0000269|PubMed:16527868, ECO:0000269|PubMed:20009022}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | AY088246 | 1e-82 | AY088246.1 Arabidopsis thaliana clone 4734 mRNA, complete sequence. |
| Publications
? help Back to Top |
- Ding Y, et al.
Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
BMC Plant Biol., 2013. 13: p. 229
[PMID:24377444] - Mao WT, et al.
The C-Terminal Sequence and PI motif of the Orchid (Oncidium Gower Ramsey) PISTILLATA (PI) Ortholog Determine its Ability to Bind AP3 Orthologs and Enter the Nucleus to Regulate Downstream Genes Controlling Petal and Stamen Formation.
Plant Cell Physiol., 2015. 56(11): p. 2079-99
[PMID:26423960] - Cai H, et al.
ERECTA signaling controls Arabidopsis inflorescence architecture through chromatin-mediated activation of PRE1 expression.
New Phytol., 2017. 214(4): p. 1579-1596
[PMID:28295392] - Ezer D, et al.
The G-Box Transcriptional Regulatory Code in Arabidopsis.
Plant Physiol., 2017. 175(2): p. 628-640
[PMID:28864470] - Peng M, et al.
Linking PHYTOCHROME-INTERACTING FACTOR to Histone Modification in Plant Shade Avoidance.
Plant Physiol., 2018. 176(2): p. 1341-1351
[PMID:29187567]
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