PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cagra.5905s0003.1.p
Organism
Capsella grandiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family NAC
Protein Properties Length: 344aa    MW: 39053.8 Da    PI: 8.4004
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cagra.5905s0003.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM167.35.1e-52221482128
                  NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdke 91 
                           pGfrFhPtdeelv++yLk+kv +k+l++ e ik+vdiyk++PwdLpk ++ +ekewyf+++rd+ky++++r+nr+t  g+Wkatg+d++
  Cagra.5905s0003.1.p  22 LPGFRFHPTDEELVSFYLKRKVLHKSLPF-ELIKKVDIYKYDPWDLPKLAAMGEKEWYFYCPRDRKYRNSTRPNRVTGGGFWKATGTDRP 110
                          69**************************9.89***************8778899************************************ PP

                  NAM  92 vlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128
                          ++s  +++ +glkk+Lvfy+gra kg+ktdW+mhe+rl
  Cagra.5905s0003.1.p 111 IYSLdSTRCIGLKKSLVFYRGRAAKGVKTDWMMHEFRL 148
                          **9856677***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019415.1E-5819193IPR003441NAC domain
PROSITE profilePS5100556.0221193IPR003441NAC domain
PfamPF023651.9E-2523148IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 344 aa     Download sequence    Send to blast
MVLVMDDEES NNNVERYDDV VLPGFRFHPT DEELVSFYLK RKVLHKSLPF ELIKKVDIYK  60
YDPWDLPKLA AMGEKEWYFY CPRDRKYRNS TRPNRVTGGG FWKATGTDRP IYSLDSTRCI  120
GLKKSLVFYR GRAAKGVKTD WMMHEFRLPS VSDSHHSTYP NYNNKKQHLN NNNNISKEIP  180
SNDAWAICRI FKKTNAVSSQ RSIPQSWVYP TIPDTNQYNS HNTATLLASS DVLSHIATRQ  240
SLIIPSPVNE HTSFTESAAA YFASQMLGVP YNNTARNIGT GDALFLRNSV TGDALFLSNN  300
ANNYFNSLTG ALTHELPNVR SMVMEEEETT VSEISATSYS TNN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A2e-522314817140Stress-induced transcription factor NAC1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00537DAPTransfer from AT5G39820Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapCagra.5905s0003.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0168761e-138AB016876.1 Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MKM21.
GenBankCP0026881e-138CP002688.1 Arabidopsis thaliana chromosome 5 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006285478.10.0putative NAC domain-containing protein 94
SwissprotQ9FIW50.0NAC94_ARATH; Putative NAC domain-containing protein 94
TrEMBLR0F9M70.0R0F9M7_9BRAS; Uncharacterized protein
STRINGCagra.5905s0003.1.p0.0(Capsella grandiflora)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM30628200
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G39820.10.0NAC domain containing protein 94