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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
Cagra.5641s0055.1.p |
| Organism |
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| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
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| Family |
NAC |
| Protein Properties |
Length: 302aa MW: 34767.9 Da PI: 7.7406 |
| Description |
NAC family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Cagra.5641s0055.1.p | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
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| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | NAM | 155.3 | 2.7e-48 | 24 | 152 | 2 | 128 |
NAM 2 ppGfrFhPtdeelvveyLkkkvegkk.leleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdk 90
pGfrFhPtdeelv +yL kkv kk +++e+++++diyk++PwdLp + ++ eke yfF+kr +ky+++ r+nr+t sg+Wkatg dk
Cagra.5641s0055.1.p 24 LPGFRFHPTDEELVGYYLSKKVLLKKpSKIDEIVSQIDIYKFDPWDLP-RSSNMEKENYFFCKRGRKYRNSIRPNRVTGSGFWKATGIDK 112
59*******************887764788888***************.45566899********************************* PP
NAM 91 evlsk..kgelvglkktLvfykgrapkgektdWvmheyrl 128
+v+s +++++glkktLv+y g+a kg+ktdW+mhe+rl
Cagra.5641s0055.1.p 113 PVYSDgpSKTVIGLKKTLVYYLGSAGKGTKTDWMMHEFRL 152
****9878888***************************98 PP
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| Sequence ? help Back to Top |
| Protein Sequence Length: 302 aa
Download sequence Send
to blast |
MEKMMGLRDN IRVSEEDEKE VVKLPGFRFH PTDEELVGYY LSKKVLLKKP SKIDEIVSQI 60
DIYKFDPWDL PRSSNMEKEN YFFCKRGRKY RNSIRPNRVT GSGFWKATGI DKPVYSDGPS 120
KTVIGLKKTL VYYLGSAGKG TKTDWMMHEF RLPTANDTIP GGPTHSNPTP TSSLQAEVWT 180
LCRIFKRNVS SHKYTSDWRE LANGKRVKQQ QSNYKEAYIS FGDNESSSST NVTKGISYER 240
SFFQLHQTHQ QQDQPIPMDT TQVDSLHDFS TDINTDHHET YDDWDELRSV VEFAFPPSSF 300
S*
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| Functional Description ? help
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| Source |
Description |
| UniProt | Transcription factor that binds to the 5'- RRYGCCGT-3' consensus core sequence. Central longevity regulator. Negative regulator of leaf senescence. Modulates cellular H(2)O(2) levels and enhances tolerance to various abiotic stresses through the regulation of DREB2A. {ECO:0000269|PubMed:22345491}. |
| Regulation -- Description ? help
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| Source |
Description |
| UniProt | INDUCTION: Up-regulated by H(2)O(2), paraquat, ozone, 3-aminotriazole and salt stress. {ECO:0000269|PubMed:22345491}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | AB026645 | 1e-110 | AB026645.1 Arabidopsis thaliana genomic DNA, chromosome 3, P1 clone: MGH6. |
| GenBank | CP002686 | 1e-110 | CP002686.1 Arabidopsis thaliana chromosome 3, complete sequence. |
| Publications
? help Back to Top |
- Shahnejat-Bushehri S,Nobmann B,Devi Allu A,Balazadeh S
JUB1 suppresses Pseudomonas syringae-induced defense responses through accumulation of DELLA proteins.
Plant Signal Behav, 2016. 11(6): p. e1181245
[PMID:27159137] - Shahnejat-Bushehri S,Tarkowska D,Sakuraba Y,Balazadeh S
Arabidopsis NAC transcription factor JUB1 regulates GA/BR metabolism and signalling.
Nat Plants, 2016. 2: p. 16013
[PMID:27249348] - Shahnejat-Bushehri S, et al.
Arabidopsis NAC Transcription Factor JUNGBRUNNEN1 Exerts Conserved Control Over Gibberellin and Brassinosteroid Metabolism and Signaling Genes in Tomato.
Front Plant Sci, 2017. 8: p. 214
[PMID:28326087] - Sakuraba Y,Bülbül S,Piao W,Choi G,Paek NC
Arabidopsis EARLY FLOWERING3 increases salt tolerance by suppressing salt stress response pathways.
Plant J., 2017. 92(6): p. 1106-1120
[PMID:29032592] - Ebrahimian-Motlagh S, et al.
JUNGBRUNNEN1 Confers Drought Tolerance Downstream of the HD-Zip I Transcription Factor AtHB13.
Front Plant Sci, 2017. 8: p. 2118
[PMID:29326734]
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