 |
PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| TF ID | Cagra.5497s0018.1.p | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
|
||||||||
| Family | ARR-B | ||||||||
| Protein Properties | Length: 692aa MW: 75175 Da PI: 6.3186 | ||||||||
| Description | ARR-B family protein | ||||||||
| Gene Model |
|
||||||||
| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | G2-like | 90.4 | 1.6e-28 | 237 | 290 | 1 | 55 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55
kpr++W+ eLH++Fv av+qL G ekA+Pk+ilelm+v+gLt+e+v+SHLQkYR+
Cagra.5497s0018.1.p 237 KPRVVWSVELHQQFVAAVNQL-GVEKAVPKKILELMNVPGLTRENVASHLQKYRI 290
79*******************.********************************7 PP
| |||||||
| 2 | Response_reg | 76 | 1.4e-25 | 39 | 147 | 1 | 109 |
EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHH CS
Response_reg 1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedale 88
vl+vdD+p+ +++l+++l+ y ev+ + +e al ll++++ +D+++ D+ mp+mdG++ll++ e +lp+i+++a ++++ +l+
Cagra.5497s0018.1.p 39 VLVVDDDPTCLMILERMLRTCLY-EVTKCNRAEMALSLLRKNKhgFDIVISDVHMPDMDGFKLLEHVGLEM-DLPVIMMSADDSKSVVLK 126
89*********************.***************888889**********************6644.8***************** PP
HHHTTESEEEESS--HHHHHH CS
Response_reg 89 alkaGakdflsKpfdpeelvk 109
+ Ga d+l Kp+ +e+l +
Cagra.5497s0018.1.p 127 GVTHGAVDYLIKPVRMEALKN 147
****************99986 PP
| |||||||
| Protein Features ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Database | Entry ID | E-value | Start | End | InterPro ID | Description |
| PIRSF | PIRSF036392 | 1.4E-214 | 16 | 683 | IPR017053 | Response regulator B-type, plant |
| SuperFamily | SSF52172 | 4.7E-36 | 35 | 172 | IPR011006 | CheY-like superfamily |
| Gene3D | G3DSA:3.40.50.2300 | 2.8E-41 | 36 | 172 | No hit | No description |
| SMART | SM00448 | 7.4E-31 | 37 | 149 | IPR001789 | Signal transduction response regulator, receiver domain |
| PROSITE profile | PS50110 | 42.221 | 38 | 153 | IPR001789 | Signal transduction response regulator, receiver domain |
| Pfam | PF00072 | 8.3E-23 | 39 | 147 | IPR001789 | Signal transduction response regulator, receiver domain |
| CDD | cd00156 | 6.49E-28 | 40 | 152 | No hit | No description |
| PROSITE profile | PS51294 | 11.54 | 234 | 293 | IPR017930 | Myb domain |
| SuperFamily | SSF46689 | 1.67E-19 | 235 | 294 | IPR009057 | Homeodomain-like |
| Gene3D | G3DSA:1.10.10.60 | 9.3E-30 | 236 | 295 | IPR009057 | Homeodomain-like |
| TIGRFAMs | TIGR01557 | 3.4E-24 | 237 | 290 | IPR006447 | Myb domain, plants |
| Pfam | PF00249 | 4.5E-8 | 239 | 289 | IPR001005 | SANT/Myb domain |
| Gene Ontology ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| GO Term | GO Category | GO Description | ||||
| GO:0000160 | Biological Process | phosphorelay signal transduction system | ||||
| GO:0009414 | Biological Process | response to water deprivation | ||||
| GO:0010082 | Biological Process | regulation of root meristem growth | ||||
| GO:0010380 | Biological Process | regulation of chlorophyll biosynthetic process | ||||
| GO:0031537 | Biological Process | regulation of anthocyanin metabolic process | ||||
| GO:0048367 | Biological Process | shoot system development | ||||
| GO:0080022 | Biological Process | primary root development | ||||
| GO:0080036 | Biological Process | regulation of cytokinin-activated signaling pathway | ||||
| GO:0080113 | Biological Process | regulation of seed growth | ||||
| GO:0005634 | Cellular Component | nucleus | ||||
| GO:0003677 | Molecular Function | DNA binding | ||||
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
| Sequence ? help Back to Top |
|---|
| Protein Sequence Length: 692 aa Download sequence Send to blast |
MMNPSHGRGL GSAGGSSSGR NQGGGGETVV EMFPSGLRVL VVDDDPTCLM ILERMLRTCL 60 YEVTKCNRAE MALSLLRKNK HGFDIVISDV HMPDMDGFKL LEHVGLEMDL PVIMMSADDS 120 KSVVLKGVTH GAVDYLIKPV RMEALKNIWQ HVVRKRRSEW SVPEHSGSIE ETGERQQQQH 180 RGGCGGAAVS GGEDAVDDNS SSVNEGNNWR GNSRKRKDED GEEQGDDKDE DASNLKKPRV 240 VWSVELHQQF VAAVNQLGVE KAVPKKILEL MNVPGLTREN VASHLQKYRI YLRRLGGVSQ 300 HQGNLNNSFM TGQDASFGPL STLNGFDLQA LAVTGQLPAQ SLAQLQAAGL GRPAMVSKSG 360 LPVSSIVDER SIFSFDNSKT RFGEGLGHHG QQAQQQPQMN LLHGVPTGLQ QQLPMGNRMS 420 IQQQIAAVRA GHSVQNSGML MPLAGQQSLP RGPPQMLTPS QSSIRQPMLS NRISERSGFS 480 GRNNIPESSR VLPTGYTNLT TQHSSSSMAY NNFQTELPVN SFPLASAPGL SVPVRKANSY 540 QEEVNSSEAG FTAPSYDMFT PRQNDWDLRS IGIAFDSHQD AESAAFSNSE AFSSSSMSRN 600 NSTVAATEHG RNHQQQLPPG MVPHHQVYAD GNSGSVRVKS ERVAVDTGAM AFQEQYSNQE 660 DLMSALLKQE GIAPVDGEFD FDAYSIDNIP V* |
| 3D Structure ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
| 1irz_A | 6e-23 | 236 | 295 | 4 | 63 | ARR10-B |
| Search in ModeBase | ||||||
| Functional Description ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Description | |||||
| UniProt | Transcriptional activator that binds specifically to the DNA sequence 5'-[AG]GATT-3'. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. Could directly activate some type-A response regulators in response to cytokinins. Regulates SHY2 by binding to its promoter (PubMed:19039136). Involved in the root-meristem size determination through the regulation of cell differentiation (PubMed:17363254). {ECO:0000269|PubMed:11574878, ECO:0000269|PubMed:11691951, ECO:0000269|PubMed:17363254, ECO:0000269|PubMed:19039136}. | |||||
| Cis-element ? help Back to Top | |
|---|---|
| Source | Link |
| PlantRegMap | Cagra.5497s0018.1.p |
| Regulation -- Description ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Description | |||||
| UniProt | INDUCTION: Down-regulated by gibberellin. {ECO:0000269|PubMed:20605455}. | |||||
| Regulation -- PlantRegMap ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Upstream Regulator | Target Gene | ||||
| PlantRegMap | Retrieve | - | ||||
| Annotation -- Nucleotide ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | |||
| GenBank | AK176489 | 0.0 | AK176489.1 Arabidopsis thaliana mRNA for putative ARR1 protein, complete cds, clone: RAFL24-30-K07. | |||
| Annotation -- Protein ? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | ||||
| Refseq | XP_006297106.1 | 0.0 | two-component response regulator ARR1 | ||||
| Swissprot | Q940D0 | 0.0 | ARR1_ARATH; Two-component response regulator ARR1 | ||||
| TrEMBL | R0HK04 | 0.0 | R0HK04_9BRAS; Two-component response regulator | ||||
| STRING | Cagra.5497s0018.1.p | 0.0 | (Capsella grandiflora) | ||||
| Orthologous Group ? help Back to Top | |||
|---|---|---|---|
| Lineage | Orthologous Group ID | Taxa Number | Gene Number |
| Malvids | OGEM2403 | 27 | 73 |
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Hit ID | E-value | Description | ||||
| AT3G16857.2 | 0.0 | response regulator 1 | ||||
| Link Out ? help Back to Top | |
|---|---|
| Phytozome | Cagra.5497s0018.1.p |
| ©2010-2022, Center
for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
Supported By
|