PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cagra.5249s0021.1.p

Organism

Capsella grandiflora

Taxonomic ID

264402

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella

Family

bZIP

Protein Properties

Length: 309aa MW: 33462.5 Da PI: 7.8308

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cagra.5249s0021.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	20	1.5e-06	187	232	18	63
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 18 rrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 +rsR RK+++i+eLe+ v+ L++ +L ++ +l ++ a+l e+ Cagra.5249s0021.1.p 187 QRSRVRKLQYIAELERTVAMLQSVEADLSVRVASLLQTRATLSLEN 232 79******************************99999999988776 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd14703	6.23E-15	181	226	No hit	No description
Gene3D	G3DSA:1.20.5.170	1.4E-5	187	239	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 309 aa Download sequence Send to blast
MSRPAQLPPR CPIPKKLSLN PVADTFYSSS SPVDSYIAQY KSSTHDSRLE DQPAWLDELL 60 CDKTDGMLTG GGGGGPLRRS ASDSVVLLGD ISADFSGFNQ SEDDESLTSE PCGELESASC 120 VYGPNSPRAK NNSSFSNNPI VSAFSDYGSQ KPPQNLDNTV KGIDFSPVGE TACGSMGVPN 180 AKRNPGQRSR VRKLQYIAEL ERTVAMLQSV EADLSVRVAS LLQTRATLSL ENSQLKQQMA 240 ILKQEKLIRE GEYQLLKKEA QRLKSGLGYS GSNNRLVRSY SAGSNIVPRK ASSHLDWNLV 300 DLTKLNLN*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Cagra.5249s0021.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AY099881	0.0	AY099881.1 Arabidopsis thaliana unknown protein (At5g04840) mRNA, complete cds.
GenBank	BT008710	0.0	BT008710.1 Arabidopsis thaliana At5g04840 gene, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006288293.1	0.0	basic leucine zipper 19
Refseq	XP_023636906.1	0.0	basic leucine zipper 19
TrEMBL	R0FGT4	0.0	R0FGT4_9BRAS; Uncharacterized protein
STRING	Cagra.5249s0021.1.p	0.0	(Capsella grandiflora)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM13642	7	9

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G42380.2	6e-19	bZIP family protein

Link Out ? help Back to Top
Phytozome	Cagra.5249s0021.1.p