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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Cagra.5118s0027.1.p |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
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Family |
Dof |
Protein Properties |
Length: 317aa MW: 34369.8 Da PI: 8.9625 |
Description |
Dof family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Cagra.5118s0027.1.p | genome | JGI | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | zf-Dof | 124.5 | 3.4e-39 | 12 | 71 | 3 | 62 |
zf-Dof 3 ekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62
++ +kcprC+st+tkfCyynnyslsqPryfCk+CrryWtkGG+lrn+PvGgg+rknkk s
Cagra.5118s0027.1.p 12 DHPQKCPRCESTHTKFCYYNNYSLSQPRYFCKTCRRYWTKGGTLRNIPVGGGCRKNKKPS 71
6789*****************************************************976 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 317 aa
Download sequence Send
to blast |
MDGGRRLRPP HDHPQKCPRC ESTHTKFCYY NNYSLSQPRY FCKTCRRYWT KGGTLRNIPV 60 GGGCRKNKKP SSSNSSSSTS SGKKPSNIIT TNTTDLMALT HSHQNYQNAP LGFSHFGGMM 120 GSYSTPEHSN VGFLESKYGG LLSQSPRPID FLDSKFDLMG VNNDNLVMVD HGSNGDHHHH 180 HHNNHHMGLN HGLGLNNSNN NGGFNGISPG SNGNGGGLMD ISACQRLMLS NYDHQHYNHQ 240 EDHQRVTTIM DVKPNPKLLS LDWQQDQSYS NGGGNGGVGK SDGGGYGGGG YINGLGSPWN 300 GLMNGYGSST KTNSLV*
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Functional Description ? help
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Source |
Description |
UniProt | Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence (By similarity). Promotes expression (PubMed:19915089). The PEAR proteins (e.g. DOF2.4, DOF5.1, DOF3.2, DOF1.1, DOF5.6 and DOF5.3) activate gene expression that promotes radial growth of protophloem sieve elements (PubMed:30626969). Involved in the regulation of interfascicular cambium formation and vascular tissue development, particularly at a very early stage during inflorescence stem development; promotes both cambium activity and phloem specification, but prevents xylem specification (PubMed:19915089). {ECO:0000250|UniProtKB:Q9M2U1, ECO:0000269|PubMed:19915089, ECO:0000269|PubMed:30626969}. |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | AB009053 | 0.0 | AB009053.1 Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MQB2. |
GenBank | BT020467 | 0.0 | BT020467.1 Arabidopsis thaliana At5g62940 gene, complete cds. |
GenBank | BT020576 | 0.0 | BT020576.1 Arabidopsis thaliana At5g62940 gene, complete cds. |
GenBank | CP002688 | 0.0 | CP002688.1 Arabidopsis thaliana chromosome 5 sequence. |