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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cagra.5105s0005.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
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Family | B3 | ||||||||
Protein Properties | Length: 208aa MW: 23989.1 Da PI: 5.8659 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 53.1 | 5.8e-17 | 30 | 120 | 1 | 98 |
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsef 90 ffk +ps + +++++++p kf++ g+k + +tle++ g + ++kl ++ ++++++ +GW+eF++a+ +keg f++F++d++s+f Cagra.5105s0005.1.p 30 FFKLVLPSTM-ENNMMRIPPKFVKLQGSK--FPDVVTLETPVGFKRSIKL--KRIGQEIWFHEGWSEFAEAHSIKEGHFLLFEYDENSSF 114 6676656555.5567********666655..7789***************..*********************************99999 PP ..EEEEE- CS B3 91 elvvkvfr 98 +v +f+ Cagra.5105s0005.1.p 115 --HVIIFN 120 ..888876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 2.0E-22 | 24 | 124 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 1.02E-24 | 24 | 124 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 3.11E-17 | 28 | 120 | No hit | No description |
PROSITE profile | PS50863 | 12.83 | 29 | 122 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 2.7E-15 | 30 | 120 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 4.5E-21 | 30 | 122 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 208 aa Download sequence Send to blast |
MVTTRKTMAR DTFSSHRRQP QDPESPVKKF FKLVLPSTME NNMMRIPPKF VKLQGSKFPD 60 VVTLETPVGF KRSIKLKRIG QEIWFHEGWS EFAEAHSIKE GHFLLFEYDE NSSFHVIIFN 120 VSACEIDYPP DALHISDSDD DIVDITDKGF IGTQGTRNND QSVNGEHKLK KRPRDIELDK 180 ILHEVDVLDS NQVLKEEEED DKRVFRG* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 167 | 173 | KLKKRPR |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Cagra.5105s0005.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK229681 | 1e-171 | AK229681.1 Arabidopsis thaliana mRNA for hypothetical protein, complete cds, clone: RAFL21-04-N20. | |||
GenBank | BT006139 | 1e-171 | BT006139.1 Arabidopsis thaliana clone RAFL21-04-N20 (R51235) unknown protein (At3g18960) mRNA, complete cds. | |||
GenBank | BT008541 | 1e-171 | BT008541.1 Arabidopsis thaliana clone U51235 unknown protein (At3g18960) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006299629.1 | 1e-148 | B3 domain-containing protein At3g18960 | ||||
Swissprot | Q84R27 | 1e-107 | Y3896_ARATH; B3 domain-containing protein At3g18960 | ||||
TrEMBL | R0GA33 | 1e-147 | R0GA33_9BRAS; Uncharacterized protein | ||||
STRING | Cagra.5105s0005.1.p | 1e-151 | (Capsella grandiflora) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1591 | 25 | 78 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G18960.1 | 1e-108 | B3 family protein |
Link Out ? help Back to Top | |
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Phytozome | Cagra.5105s0005.1.p |
Publications ? help Back to Top | |||
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