PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella

Family

MIKC_MADS

Protein Properties

Length: 231aa MW: 26162.6 Da PI: 9.7533

Description

MIKC_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cagra.4960s0003.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	99.2	1.7e-31	9	58	1	50
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50 krien++nrqvtf+kRrng+lKKA+ELSvLCdaeva+i+fs++g+lyey+ Cagra.4960s0003.1.p 9 KRIENSTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSTRGRLYEYA 58 79***********************************************8 PP
2	K-box	105.3	7.5e-35	77	173	4	100
K-box 4 ssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenka 93 ++++ ++e +a+++qqe+akL+++i+++q+++R+l+G++L+ Ls+keL+q+e++Lek++++iRskK+elll++ie++qk+e el++en + Cagra.4960s0003.1.p 77 TNTSTVQEINAAYYQQESAKLRQQIQTIQNSNRNLMGDSLSALSVKELKQVENRLEKAISRIRSKKHELLLAEIENMQKREIELDNENIY 166 34445999******************************************************************************** PP K-box 94 Lrkklee 100 Lr+k++e Cagra.4960s0003.1.p 167 LRTKVAE 173 **986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00432	7.0E-42	1	60	IPR002100	Transcription factor, MADS-box
PROSITE profile	PS50066	34.034	1	61	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	5.89E-33	2	82	IPR002100	Transcription factor, MADS-box
CDD	cd00265	3.20E-43	2	76	No hit	No description
PROSITE pattern	PS00350	0	3	57	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	5.9E-33	3	23	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	1.4E-26	10	57	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	5.9E-33	23	38	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	5.9E-33	38	59	IPR002100	Transcription factor, MADS-box
Pfam	PF01486	5.2E-25	85	171	IPR002487	Transcription factor, K-box
PROSITE profile	PS51297	14.569	87	177	IPR002487	Transcription factor, K-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0048481	Biological Process	plant ovule development
GO:0080155	Biological Process	regulation of double fertilization forming a zygote and endosperm
GO:0090376	Biological Process	seed trichome differentiation
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 231 aa Download sequence Send to blast
MGRGKIEIKR IENSTNRQVT FCKRRNGLLK KAYELSVLCD AEVALIVFST RGRLYEYANN 60 NIRSTIERYK KACSDSTNTS TVQEINAAYY QQESAKLRQQ IQTIQNSNRN LMGDSLSALS 120 VKELKQVENR LEKAISRIRS KKHELLLAEI ENMQKREIEL DNENIYLRTK VAEVERFQQQ 180 HHQMVSGSEI NAMEALAARN YFGHSIMTAG SGSGNGGSYS DPDKKILHLG *

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1tqe_P	2e-21	1	69	1	69	Myocyte-specific enhancer factor 2B
1tqe_Q	2e-21	1	69	1	69	Myocyte-specific enhancer factor 2B
1tqe_R	2e-21	1	69	1	69	Myocyte-specific enhancer factor 2B
1tqe_S	2e-21	1	69	1	69	Myocyte-specific enhancer factor 2B
5f28_A	2e-21	1	86	1	89	MEF2C
5f28_B	2e-21	1	86	1	89	MEF2C
5f28_C	2e-21	1	86	1	89	MEF2C
5f28_D	2e-21	1	86	1	89	MEF2C
6c9l_A	2e-21	1	69	1	69	Myocyte-specific enhancer factor 2B
6c9l_B	2e-21	1	69	1	69	Myocyte-specific enhancer factor 2B
6c9l_C	2e-21	1	69	1	69	Myocyte-specific enhancer factor 2B
6c9l_D	2e-21	1	69	1	69	Myocyte-specific enhancer factor 2B
6c9l_E	2e-21	1	69	1	69	Myocyte-specific enhancer factor 2B
6c9l_F	2e-21	1	69	1	69	Myocyte-specific enhancer factor 2B
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor (Probable). Is required, together with TT16/AGL32 for the maternal control of endothelium formation, which is essential for female gametophyte development and fertilization, and seed formation (PubMed:22176531). {ECO:0000269\|PubMed:22176531, ECO:0000305}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Cagra.4960s0003.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	EU551767	0.0	EU551767.1 Capsella bursa-pastoris SEEDSTICK-like protein (STKb) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006286826.2	1e-169	agamous-like MADS-box protein AGL11
Swissprot	Q38836	1e-153	AGL11_ARATH; Agamous-like MADS-box protein AGL11
TrEMBL	R0GS60	1e-167	R0GS60_9BRAS; Uncharacterized protein
STRING	Cagra.4960s0003.1.p	1e-168	(Capsella grandiflora)
STRING	XP_006286826.1	1e-168	(Capsella rubella)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM4994	22	34

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G09960.1	1e-156	MIKC_MADS family protein

Link Out ? help Back to Top
Phytozome	Cagra.4960s0003.1.p

Publications ? help Back to Top
Ezquer I, et al. The Developmental Regulator SEEDSTICK Controls Structural and Mechanical Properties of the Arabidopsis Seed Coat. Plant Cell, 2016. 28(10): p. 2478-2492 [PMID:27624758]