PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cagra.4909s0021.1.p
Organism
Capsella grandiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family G2-like
Protein Properties Length: 355aa    MW: 40316.2 Da    PI: 6.7067
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cagra.4909s0021.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like100.61.1e-31208262256
              G2-like   2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 
                          +r+rW+++LH++Fv+a+++LGG+++AtPk+i++lmkv+gLt+++vkSHLQkYR++
  Cagra.4909s0021.1.p 208 QRRRWSQDLHRKFVDALHKLGGPQVATPKQIRDLMKVDGLTNDEVKSHLQKYRMH 262
                          8****************************************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.605.3E-28204265IPR009057Homeodomain-like
PROSITE profilePS5129413.3204264IPR017930Myb domain
SuperFamilySSF466893.41E-17204265IPR009057Homeodomain-like
TIGRFAMsTIGR015572.6E-25208262IPR006447Myb domain, plants
PfamPF002491.1E-7209260IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010092Biological Processspecification of organ identity
GO:0010629Biological Processnegative regulation of gene expression
GO:0048449Biological Processfloral organ formation
GO:0005634Cellular Componentnucleus
GO:0005829Cellular Componentcytosol
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 355 aa     Download sequence    Send to blast
MVQTETDQRM GLNLNLSIYS LPKPLSQFLD EVSRIKDNHL KLSEIDGYVG RLEEERKKID  60
VFKRELPLCM LLLNEAIGAL QEEARKGSSV MASNGKFNDG EGAKLETDKK SWMSSAQLWI  120
SNPNSQFQSR NEEDDRCVTQ NPFQNCNQGG AFLPFNRPPP PPPPPAPLSL MTPTSDMVMD  180
CNRIEQNHHH LFNKPSQLQS HHIQKKEQRR RWSQDLHRKF VDALHKLGGP QVATPKQIRD  240
LMKVDGLTND EVKSHLQKYR MHIRKHPLHP SKTLSSSDQA GVLERETQSL ISLSRSDSPQ  300
SPLVARGLFS SNNGGHSSEE AEEEDDEEEE EEKSDGRSCR NESKKKRQVL DLEL*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional repressor that functions with ULT1 in a pathway which regulates floral meristem homeostasis and organ number in the flower. Binds specifically to the DNA sequence motif 5'-GTAGATTCCT-3' of WUS promoter, and may be involved in direct regulation of WUS expression. Binds specifically to the DNA sequence motif 5'-AAGAATCTTT-3' found in the promoters of AG and the NAC domain genes CUC1, CUC2 and CUC3, and may be involved in direct regulation of these gene expressions.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00475DAPTransfer from AT4G37180Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapCagra.4909s0021.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0289850.0BT028985.1 Arabidopsis thaliana At4g37180 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006283840.20.0transcription factor HHO5
SwissprotF4JRB00.0HHO5_ARATH; Transcription factor HHO5
TrEMBLR0GZX20.0R0GZX2_9BRAS; Uncharacterized protein (Fragment)
STRINGCagra.4909s0021.1.p0.0(Capsella grandiflora)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM49222652
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37180.10.0G2-like family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Nagarajan VK,Satheesh V,Poling MD,Raghothama KG,Jain A
    Arabidopsis MYB-Related HHO2 Exerts a Regulatory Influence on a Subset of Root Traits and Genes Governing Phosphate Homeostasis.
    Plant Cell Physiol., 2016. 57(6): p. 1142-52
    [PMID:27016098]